Magnesium in PDB 3suc: Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12

The structure of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12, PDB code: 3suc was solved by Y.Xiang, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.27 / 2.15
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	95.889, 95.889, 795.391, 90.00, 90.00, 120.00
R / Rfree (%)	26.1 / 29.1

The structure of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 (pdb code 3suc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12, PDB code: 3suc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg855 b:47.6 occ:1.00 O1A A:ATP856 2.1 58.8 1.0 O1B A:ATP856 2.3 49.6 1.0 O3G A:ATP856 2.7 53.8 1.0 PB A:ATP856 3.4 54.1 1.0 PA A:ATP856 3.5 60.7 1.0 O3B A:ATP856 3.7 54.6 1.0 PG A:ATP856 3.8 54.3 1.0 O3A A:ATP856 3.8 56.0 1.0 OE2 A:GLU794 4.0 54.4 1.0 NH1 A:ARG792 4.1 63.3 1.0 O2G A:ATP856 4.2 51.5 1.0 NE1 A:TRP795 4.2 43.4 1.0 O5' A:ATP856 4.3 60.1 1.0 OE1 A:GLU698 4.4 47.1 1.0 O2A A:ATP856 4.6 58.8 1.0 OE2 A:GLU698 4.7 44.0 1.0 CD A:GLU698 4.8 44.4 1.0 O2B A:ATP856 4.8 51.3 1.0 CE2 A:TRP795 5.0 40.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg857 b:47.3 occ:1.00 O A:HOH862 2.2 40.0 1.0 O A:HOH863 2.5 40.5 1.0 OD2 A:ASP312 2.5 57.8 1.0 NE2 A:HIS285 2.7 59.1 1.0 OE1 A:GLU310 2.8 56.2 1.0 CG A:ASP312 3.4 54.2 1.0 CE1 A:HIS285 3.6 59.0 1.0 CB A:ASP312 3.6 51.2 1.0 CD2 A:HIS285 3.7 57.9 1.0 CD A:GLU310 3.8 52.7 1.0 OD2 A:ASP280 3.9 57.6 1.0 OD1 A:ASP279 4.4 68.7 1.0 OG1 A:THR283 4.4 50.5 1.0 OD1 A:ASP312 4.5 55.0 1.0 OE2 A:GLU310 4.5 56.1 1.0 NE2 A:HIS337 4.6 72.4 1.0 NZ A:LYS335 4.7 56.4 1.0 CE1 A:HIS240 4.7 56.9 1.0 CA A:CA1 4.7 49.6 1.0 CG A:GLU310 4.7 48.3 1.0 OD2 A:ASP313 4.8 64.0 1.0 ND1 A:HIS285 4.8 58.5 1.0 NE2 A:HIS240 4.8 56.9 1.0 CG A:HIS285 4.8 56.7 1.0

Y.Xiang, P.G Leiman, L.Li, S.Grimes, D.L.Anderson, M.G.Rossmann. Crystallographic Insights Into the Autocatalytic Assembly Mechanism of A Bacteriophage Tail Spike Mol.Cell V. 34 375 2009.
ISSN: ISSN 1097-2765
PubMed: 19450535
DOI: 10.1016/J.MOLCEL.2009.04.009