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Magnesium in PDB 3swi: E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115

Enzymatic activity of E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115

All present enzymatic activity of E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115:
2.5.1.7;

Protein crystallography data

The structure of E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115, PDB code: 3swi was solved by J.-Y.Zhu, Y.Yang, E.Schonbrunn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.43 / 2.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 137.400, 137.400, 137.400, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 26.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115 (pdb code 3swi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115, PDB code: 3swi:

Magnesium binding site 1 out of 1 in 3swi

Go back to Magnesium Binding Sites List in 3swi
Magnesium binding site 1 out of 1 in the E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Cloacae Mura in Complex with Enolpyruvyl-Udp-N-Acetylgalactosamine and Covalent Adduct of Pep with CYS115 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg425

b:21.4
occ:1.00
 O13 A:QPA115 1.8 33.1 1.0
O9 A:QPA115 2.1 32.6 1.0
O1A A:UD2426 2.3 36.5 1.0
O A:HOH537 2.4 17.6 1.0
O A:HOH500 2.5 18.9 1.0
O A:HOH472 2.6 12.8 1.0
C10 A:QPA115 2.8 31.8 1.0
P2 A:QPA115 3.1 32.2 1.0
O10 A:QPA115 3.4 32.5 1.0
O14 A:QPA115 3.5 33.0 1.0
C8 A:QPA115 3.6 32.8 1.0
PA A:UD2426 3.6 36.3 1.0
NH2 A:ARG397 3.7 35.8 1.0
C9 A:QPA115 3.8 29.8 1.0
C5B A:UD2426 3.8 35.8 1.0
O12 A:QPA115 3.8 34.9 1.0
O5B A:UD2426 4.0 36.0 1.0
O3A A:UD2426 4.4 35.0 1.0
O11 A:QPA115 4.5 31.3 1.0
O A:THR89 4.7 26.0 1.0
O2A A:UD2426 4.7 38.6 1.0
CZ A:ARG397 4.8 35.1 1.0
O6' A:UD2426 4.9 36.4 1.0
C A:THR89 5.0 28.9 1.0

Reference:

J.Y.Zhu, Y.Yang, H.Han, S.Betzi, S.H.Olesen, F.Marsilio, E.Schonbrunn. Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura). J.Biol.Chem. V. 287 12657 2012.
ISSN: ISSN 0021-9258
PubMed: 22378791
DOI: 10.1074/JBC.M112.342725
Page generated: Mon Dec 14 08:52:06 2020

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