Magnesium in PDB 3t1k: HSP90 N-Terminal Domain Bound to Anp
Protein crystallography data
The structure of HSP90 N-Terminal Domain Bound to Anp, PDB code: 3t1k
was solved by
J.Li,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.94 /
1.50
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.274,
55.969,
60.535,
93.39,
95.82,
112.49
|
R / Rfree (%)
|
16.2 /
18.9
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the HSP90 N-Terminal Domain Bound to Anp
(pdb code 3t1k). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
HSP90 N-Terminal Domain Bound to Anp, PDB code: 3t1k:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 3t1k
Go back to
Magnesium Binding Sites List in 3t1k
Magnesium binding site 1 out
of 2 in the HSP90 N-Terminal Domain Bound to Anp
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of HSP90 N-Terminal Domain Bound to Anp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:12.4
occ:1.00
|
OD1
|
A:ASN51
|
2.0
|
12.3
|
1.0
|
O2G
|
A:ANP301
|
2.0
|
15.3
|
1.0
|
O1B
|
A:ANP301
|
2.1
|
13.0
|
1.0
|
O
|
A:HOH506
|
2.1
|
13.1
|
1.0
|
O1A
|
A:ANP301
|
2.1
|
11.7
|
1.0
|
O
|
A:HOH512
|
2.2
|
16.5
|
1.0
|
CG
|
A:ASN51
|
3.0
|
11.6
|
1.0
|
PB
|
A:ANP301
|
3.1
|
12.6
|
1.0
|
PA
|
A:ANP301
|
3.2
|
11.6
|
1.0
|
PG
|
A:ANP301
|
3.3
|
14.4
|
1.0
|
O3A
|
A:ANP301
|
3.4
|
11.1
|
1.0
|
ND2
|
A:ASN51
|
3.5
|
11.8
|
1.0
|
N3B
|
A:ANP301
|
3.7
|
13.4
|
1.0
|
O5'
|
A:ANP301
|
4.0
|
11.4
|
1.0
|
O
|
A:HOH514
|
4.1
|
15.5
|
1.0
|
O1G
|
A:ANP301
|
4.1
|
17.1
|
1.0
|
O
|
A:HOH658
|
4.2
|
30.2
|
1.0
|
OE1
|
A:GLU47
|
4.2
|
13.5
|
1.0
|
O
|
A:GLU47
|
4.3
|
10.6
|
1.0
|
O
|
A:HOH555
|
4.3
|
23.4
|
1.0
|
CB
|
A:ASN51
|
4.3
|
10.3
|
1.0
|
O3G
|
A:ANP301
|
4.4
|
14.2
|
1.0
|
O2A
|
A:ANP301
|
4.5
|
12.2
|
1.0
|
O2B
|
A:ANP301
|
4.5
|
15.1
|
1.0
|
CA
|
A:ASN51
|
4.5
|
10.9
|
1.0
|
N
|
A:ASN51
|
4.6
|
10.4
|
1.0
|
CA
|
A:GLY137
|
4.6
|
10.9
|
1.0
|
OD2
|
A:ASP54
|
4.7
|
18.4
|
1.0
|
N
|
A:PHE138
|
4.7
|
10.6
|
1.0
|
N
|
A:GLY137
|
4.9
|
11.0
|
1.0
|
C
|
A:GLY137
|
4.9
|
10.2
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 3t1k
Go back to
Magnesium Binding Sites List in 3t1k
Magnesium binding site 2 out
of 2 in the HSP90 N-Terminal Domain Bound to Anp
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of HSP90 N-Terminal Domain Bound to Anp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:12.7
occ:1.00
|
O2G
|
B:ANP301
|
2.0
|
14.4
|
1.0
|
OD1
|
B:ASN51
|
2.1
|
12.3
|
1.0
|
O
|
B:HOH502
|
2.1
|
12.9
|
1.0
|
O1B
|
B:ANP301
|
2.1
|
13.2
|
1.0
|
O1A
|
B:ANP301
|
2.1
|
11.8
|
1.0
|
O
|
B:HOH506
|
2.1
|
15.3
|
1.0
|
CG
|
B:ASN51
|
3.1
|
11.5
|
1.0
|
PB
|
B:ANP301
|
3.1
|
12.7
|
1.0
|
PA
|
B:ANP301
|
3.2
|
12.0
|
1.0
|
PG
|
B:ANP301
|
3.3
|
14.4
|
1.0
|
O3A
|
B:ANP301
|
3.4
|
11.7
|
1.0
|
ND2
|
B:ASN51
|
3.5
|
11.2
|
1.0
|
N3B
|
B:ANP301
|
3.7
|
12.9
|
1.0
|
O5'
|
B:ANP301
|
4.0
|
12.2
|
1.0
|
O
|
B:HOH510
|
4.0
|
16.1
|
1.0
|
O1G
|
B:ANP301
|
4.1
|
17.0
|
1.0
|
OE1
|
B:GLU47
|
4.2
|
13.7
|
1.0
|
O
|
B:HOH580
|
4.3
|
24.9
|
1.0
|
O
|
B:GLU47
|
4.3
|
10.5
|
1.0
|
CB
|
B:ASN51
|
4.4
|
11.2
|
1.0
|
O3G
|
B:ANP301
|
4.4
|
14.2
|
1.0
|
O2A
|
B:ANP301
|
4.5
|
13.5
|
1.0
|
O2B
|
B:ANP301
|
4.5
|
14.3
|
1.0
|
CA
|
B:ASN51
|
4.6
|
10.9
|
1.0
|
CA
|
B:GLY137
|
4.6
|
11.9
|
1.0
|
N
|
B:ASN51
|
4.6
|
10.0
|
1.0
|
N
|
B:PHE138
|
4.7
|
11.5
|
1.0
|
OD2
|
B:ASP54
|
4.8
|
17.2
|
1.0
|
N
|
B:GLY137
|
4.9
|
11.6
|
1.0
|
C
|
B:GLY137
|
4.9
|
11.2
|
1.0
|
|
Reference:
J.Li,
J.Li.
N/A N/A.
Page generated: Thu Aug 15 11:17:47 2024
|