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Magnesium in PDB 3t1k: HSP90 N-Terminal Domain Bound to Anp

Protein crystallography data

The structure of HSP90 N-Terminal Domain Bound to Anp, PDB code: 3t1k was solved by J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.94 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 43.274, 55.969, 60.535, 93.39, 95.82, 112.49
R / Rfree (%) 16.2 / 18.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the HSP90 N-Terminal Domain Bound to Anp (pdb code 3t1k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the HSP90 N-Terminal Domain Bound to Anp, PDB code: 3t1k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3t1k

Go back to Magnesium Binding Sites List in 3t1k
Magnesium binding site 1 out of 2 in the HSP90 N-Terminal Domain Bound to Anp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of HSP90 N-Terminal Domain Bound to Anp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:12.4
occ:1.00
OD1 A:ASN51 2.0 12.3 1.0
O2G A:ANP301 2.0 15.3 1.0
O1B A:ANP301 2.1 13.0 1.0
O A:HOH506 2.1 13.1 1.0
O1A A:ANP301 2.1 11.7 1.0
O A:HOH512 2.2 16.5 1.0
CG A:ASN51 3.0 11.6 1.0
PB A:ANP301 3.1 12.6 1.0
PA A:ANP301 3.2 11.6 1.0
PG A:ANP301 3.3 14.4 1.0
O3A A:ANP301 3.4 11.1 1.0
ND2 A:ASN51 3.5 11.8 1.0
N3B A:ANP301 3.7 13.4 1.0
O5' A:ANP301 4.0 11.4 1.0
O A:HOH514 4.1 15.5 1.0
O1G A:ANP301 4.1 17.1 1.0
O A:HOH658 4.2 30.2 1.0
OE1 A:GLU47 4.2 13.5 1.0
O A:GLU47 4.3 10.6 1.0
O A:HOH555 4.3 23.4 1.0
CB A:ASN51 4.3 10.3 1.0
O3G A:ANP301 4.4 14.2 1.0
O2A A:ANP301 4.5 12.2 1.0
O2B A:ANP301 4.5 15.1 1.0
CA A:ASN51 4.5 10.9 1.0
N A:ASN51 4.6 10.4 1.0
CA A:GLY137 4.6 10.9 1.0
OD2 A:ASP54 4.7 18.4 1.0
N A:PHE138 4.7 10.6 1.0
N A:GLY137 4.9 11.0 1.0
C A:GLY137 4.9 10.2 1.0

Magnesium binding site 2 out of 2 in 3t1k

Go back to Magnesium Binding Sites List in 3t1k
Magnesium binding site 2 out of 2 in the HSP90 N-Terminal Domain Bound to Anp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of HSP90 N-Terminal Domain Bound to Anp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:12.7
occ:1.00
O2G B:ANP301 2.0 14.4 1.0
OD1 B:ASN51 2.1 12.3 1.0
O B:HOH502 2.1 12.9 1.0
O1B B:ANP301 2.1 13.2 1.0
O1A B:ANP301 2.1 11.8 1.0
O B:HOH506 2.1 15.3 1.0
CG B:ASN51 3.1 11.5 1.0
PB B:ANP301 3.1 12.7 1.0
PA B:ANP301 3.2 12.0 1.0
PG B:ANP301 3.3 14.4 1.0
O3A B:ANP301 3.4 11.7 1.0
ND2 B:ASN51 3.5 11.2 1.0
N3B B:ANP301 3.7 12.9 1.0
O5' B:ANP301 4.0 12.2 1.0
O B:HOH510 4.0 16.1 1.0
O1G B:ANP301 4.1 17.0 1.0
OE1 B:GLU47 4.2 13.7 1.0
O B:HOH580 4.3 24.9 1.0
O B:GLU47 4.3 10.5 1.0
CB B:ASN51 4.4 11.2 1.0
O3G B:ANP301 4.4 14.2 1.0
O2A B:ANP301 4.5 13.5 1.0
O2B B:ANP301 4.5 14.3 1.0
CA B:ASN51 4.6 10.9 1.0
CA B:GLY137 4.6 11.9 1.0
N B:ASN51 4.6 10.0 1.0
N B:PHE138 4.7 11.5 1.0
OD2 B:ASP54 4.8 17.2 1.0
N B:GLY137 4.9 11.6 1.0
C B:GLY137 4.9 11.2 1.0

Reference:

J.Li, J.Li. N/A N/A.
Page generated: Thu Aug 15 11:17:47 2024

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