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Magnesium in PDB 3t2s: HSP90 N-Terminal Domain Bound to Ags

Protein crystallography data

The structure of HSP90 N-Terminal Domain Bound to Ags, PDB code: 3t2s was solved by J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.27 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 43.237, 55.939, 60.550, 93.61, 95.60, 112.61
R / Rfree (%) 18.5 / 22.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the HSP90 N-Terminal Domain Bound to Ags (pdb code 3t2s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the HSP90 N-Terminal Domain Bound to Ags, PDB code: 3t2s:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3t2s

Go back to Magnesium Binding Sites List in 3t2s
Magnesium binding site 1 out of 2 in the HSP90 N-Terminal Domain Bound to Ags


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of HSP90 N-Terminal Domain Bound to Ags within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:9.8
occ:1.00
OD1 A:ASN51 2.0 10.1 1.0
O A:HOH503 2.1 12.5 1.0
O1A A:AGS301 2.1 10.7 1.0
O2B A:AGS301 2.1 11.3 1.0
O A:HOH513 2.2 16.4 1.0
S1G A:AGS301 2.3 31.7 1.0
CG A:ASN51 3.0 8.6 1.0
PB A:AGS301 3.2 11.0 1.0
PA A:AGS301 3.3 9.8 1.0
ND2 A:ASN51 3.4 9.0 1.0
O3A A:AGS301 3.5 10.8 1.0
PG A:AGS301 3.6 34.5 1.0
O3B A:AGS301 3.9 17.6 1.0
O A:HOH510 3.9 13.2 1.0
O5' A:AGS301 4.0 9.1 1.0
O A:HOH571 4.1 18.8 1.0
O3G A:AGS301 4.1 30.8 1.0
OE1 A:GLU47 4.2 13.0 1.0
CB A:ASN51 4.3 8.5 1.0
O A:GLU47 4.3 9.9 1.0
O A:HOH681 4.5 34.3 1.0
CA A:ASN51 4.5 8.5 1.0
O1B A:AGS301 4.5 14.3 1.0
O2A A:AGS301 4.5 11.2 1.0
N A:ASN51 4.6 8.7 1.0
OD2 A:ASP54 4.6 15.2 1.0
CA A:GLY137 4.9 10.5 1.0
O2G A:AGS301 4.9 37.7 1.0
N A:PHE138 5.0 9.5 1.0

Magnesium binding site 2 out of 2 in 3t2s

Go back to Magnesium Binding Sites List in 3t2s
Magnesium binding site 2 out of 2 in the HSP90 N-Terminal Domain Bound to Ags


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of HSP90 N-Terminal Domain Bound to Ags within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:10.1
occ:1.00
O1A B:AGS301 2.0 10.8 1.0
OD1 B:ASN51 2.1 10.7 1.0
O B:HOH505 2.1 11.9 1.0
O2B B:AGS301 2.1 11.9 1.0
O B:HOH712 2.2 14.8 1.0
O B:HOH711 2.2 17.5 1.0
CG B:ASN51 3.0 9.2 1.0
PB B:AGS301 3.2 11.3 1.0
PA B:AGS301 3.2 10.0 1.0
ND2 B:ASN51 3.4 9.0 1.0
O3A B:AGS301 3.5 10.9 1.0
O3B B:AGS301 3.8 15.8 1.0
O5' B:AGS301 3.9 9.0 1.0
O B:HOH506 4.0 13.0 1.0
O B:HOH552 4.0 17.9 1.0
O B:HOH669 4.1 31.2 1.0
OE1 B:GLU47 4.2 12.5 1.0
O B:GLU47 4.3 9.7 1.0
CB B:ASN51 4.4 9.3 1.0
O2A B:AGS301 4.5 11.1 1.0
O1B B:AGS301 4.5 12.6 1.0
CA B:ASN51 4.6 8.2 1.0
N B:ASN51 4.6 8.7 1.0
S1G B:AGS301 4.6 38.0 1.0
OD2 B:ASP54 4.6 14.1 1.0
CA B:GLY137 4.8 10.1 1.0
PG B:AGS301 4.9 33.3 1.0
N B:PHE138 4.9 9.8 1.0

Reference:

J.Li, J.Li. N/A N/A.
Page generated: Mon Dec 14 08:53:19 2020

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