Magnesium in PDB 3t4r: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

The structure of Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain, PDB code: 3t4r was solved by N.Martinez, N.Tarbouriech, M.Jamin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.60 / 2.00
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	43.280, 43.280, 89.380, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 29.4

The binding sites of Magnesium atom in the Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain (pdb code 3t4r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain, PDB code: 3t4r:

Magnesium binding site 1 out of 1 in the Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg82 b:38.5 occ:0.50 OD2 A:ASP36 2.6 54.2 1.0 O A:HOH92 3.2 77.4 1.0 OD1 A:ASP36 3.3 43.9 1.0 CG A:ASP36 3.3 45.0 1.0 CD1 A:ILE4 4.1 52.9 0.5 O A:HOH84 4.5 44.5 1.0 O A:HOH97 4.7 59.3 1.0 O A:HOH89 4.8 59.4 1.0 CB A:ASP36 4.9 45.4 1.0 NZ A:LYS8 4.9 39.2 1.0

N.Martinez, E.A.Ribeiro, C.Leyrat, N.Tarbouriech, R.W.Ruigrok, M.Jamin. Structure of the C-Terminal Domain of Lettuce Necrotic Yellows Virus Phosphoprotein. J.Virol. V. 87 9569 2013.
ISSN: ISSN 0022-538X
PubMed: 23785215
DOI: 10.1128/JVI.00999-13