Magnesium in PDB 3t5g: Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D

The structure of Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D, PDB code: 3t5g was solved by S.A.Ismail, Y.-X.Chen, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.01 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.890, 57.380, 134.520, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 23.5

The binding sites of Magnesium atom in the Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D (pdb code 3t5g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D, PDB code: 3t5g:

Magnesium binding site 1 out of 1 in the Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Fully Modified Farnesylated Rheb in Complex with PDE6D within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:14.4 occ:1.00 O3B A:GDP201 2.1 9.9 1.0 O A:HOH395 2.1 15.9 1.0 OG A:SER20 2.1 10.4 1.0 O A:HOH434 2.1 15.3 1.0 O A:HOH396 2.1 14.0 1.0 O A:HOH449 2.2 14.2 1.0 CB A:SER20 3.2 9.6 1.0 PB A:GDP201 3.3 11.5 1.0 O1B A:GDP201 3.5 11.1 1.0 N A:SER20 3.9 9.8 1.0 OD2 A:ASP60 4.1 13.6 1.0 O1A A:GDP201 4.1 14.6 1.0 CA A:SER20 4.1 9.9 1.0 O A:PRO37 4.2 28.2 1.0 OD1 A:ASP60 4.2 14.2 1.0 O A:ASP36 4.2 28.6 1.0 CD2 A:TYR35 4.3 25.1 1.0 O2B A:GDP201 4.3 11.7 1.0 CA A:PRO37 4.3 28.4 1.0 O A:HOH296 4.4 44.9 1.0 O3A A:GDP201 4.4 11.4 1.0 CG A:ASP60 4.5 13.6 1.0 O A:ILE39 4.6 26.2 1.0 C A:PRO37 4.6 28.2 1.0 CE2 A:TYR35 4.6 24.7 1.0 O A:THR61 4.6 14.8 1.0 PA A:GDP201 4.6 13.7 1.0 O A:TYR35 4.8 27.7 1.0 O2A A:GDP201 4.8 13.0 1.0 CB A:LYS19 4.9 9.7 1.0 C A:ASP36 4.9 28.6 1.0 NZ A:LYS19 5.0 13.1 1.0

S.A.Ismail, Y.X.Chen, A.Rusinova, A.Chandra, M.Bierbaum, L.Gremer, G.Triola, H.Waldmann, P.I.Bastiaens, A.Wittinghofer. ARL2-Gtp and ARL3-Gtp Regulate A Gdi-Like Transport System For Farnesylated Cargo. Nat.Chem.Biol. V. 7 942 2011.
ISSN: ISSN 1552-4450
PubMed: 22002721
DOI: 10.1038/NCHEMBIO.686