Magnesium in PDB 3tc1: Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori

The structure of Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori, PDB code: 3tc1 was solved by J.Y.Zhang, X.L.Zhang, D.F.Li, Q.M.Zou, D.C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.64 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	109.330, 109.330, 103.410, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 23.9

The binding sites of Magnesium atom in the Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori (pdb code 3tc1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori, PDB code: 3tc1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:35.5 occ:1.00 O A:HOH326 2.3 20.3 1.0 OD2 A:ASP200 2.4 22.5 1.0 O A:HOH325 2.4 30.0 1.0 O A:HOH425 2.4 32.1 1.0 O A:HOH524 2.4 33.3 1.0 O A:HOH544 2.5 31.3 1.0 CG A:ASP200 3.3 21.6 1.0 OD1 A:ASP200 3.7 20.5 1.0 O A:HOH568 3.7 34.8 1.0 O A:ASP200 3.8 14.6 1.0 O A:HOH414 4.0 34.6 1.0 OD1 A:ASP219 4.1 21.9 1.0 OD2 A:ASP219 4.2 19.1 1.0 C A:ASP200 4.3 16.4 1.0 OD1 A:ASP201 4.4 19.1 1.0 CB A:ASP200 4.5 19.1 1.0 CG A:ASP219 4.6 20.6 1.0 NE2 A:GLN197 4.7 22.8 1.0 CB A:ASP204 4.8 25.0 1.0 N A:ASP201 4.9 12.7 1.0 CA A:ASP200 5.0 15.6 1.0 CA A:ASP201 5.0 14.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:32.5 occ:1.00 OD2 B:ASP200 2.2 18.2 1.0 O B:HOH547 2.3 22.6 1.0 O B:HOH548 2.3 35.4 1.0 O B:HOH549 2.4 27.5 1.0 O B:HOH353 2.5 24.2 1.0 O B:HOH352 2.5 37.2 1.0 CG B:ASP200 3.1 18.2 1.0 OD1 B:ASP200 3.5 20.4 1.0 O B:HOH434 3.9 40.6 1.0 O B:ASP200 3.9 10.3 1.0 O B:HOH507 4.0 38.8 1.0 OD1 B:ASP219 4.2 20.4 1.0 OD2 B:ASP219 4.3 17.5 1.0 C B:ASP200 4.3 13.2 1.0 CB B:ASP200 4.4 15.0 1.0 OD1 B:ASP201 4.5 18.5 1.0 NE2 B:GLN197 4.6 22.6 1.0 O B:HOH380 4.7 43.8 1.0 CG B:ASP219 4.7 21.2 1.0 N B:ASP201 4.8 11.1 1.0 CB B:ASP204 4.9 18.4 1.0 CA B:ASP200 4.9 13.9 1.0 CA B:ASP201 5.0 11.2 1.0

J.Y.Zhang, X.L.Zhang, D.F.Li, Q.M.Zou, D.C.Wang. Crystal Structure of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori To Be Published.