Magnesium in PDB 3tep: Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion

The structure of Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion, PDB code: 3tep was solved by Y.Kawai, J.Marles-Wright, R.M.Cleverley, R.Emmins, S.Ishikawa, M.Kuwano, N.Heinz, N.Khai Bui, C.N.Hoyland, N.Ogasawara, R.J.Lewis, W.Vollmer, R.A.Daniel, J.Errington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.74 / 2.03
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.326, 73.326, 163.962, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 23.3

The binding sites of Magnesium atom in the Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion (pdb code 3tep). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion, PDB code: 3tep:

Magnesium binding site 1 out of 1 in the Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lytr-CPS2A-Psr Family Protein with Bound Octaprenyl Pyrophosphate Lipid and Magnesium Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:28.6 occ:1.00 O A:HOH515 2.0 29.2 1.0 O2 A:ZTP503 2.1 30.4 1.0 O5 A:ZTP503 2.1 28.9 1.0 O A:HOH508 2.1 24.6 1.0 OD2 A:ASP246 2.2 24.7 1.0 OD2 A:ASP234 2.2 28.1 1.0 CG A:ASP234 3.2 25.7 1.0 CG A:ASP246 3.2 22.6 1.0 P1 A:ZTP503 3.5 31.4 1.0 P2 A:ZTP503 3.5 30.8 1.0 OD1 A:ASP246 3.5 22.2 1.0 CB A:ASP234 3.6 25.6 1.0 NH1 A:ARG267 3.8 25.4 1.0 O4 A:ZTP503 3.9 32.8 1.0 NE A:ARG244 3.9 33.4 1.0 NH2 A:ARG244 4.0 34.1 1.0 O A:HOH682 4.0 43.6 1.0 C40 A:ZTP503 4.2 32.7 1.0 OD1 A:ASP234 4.3 25.4 1.0 O A:HOH82 4.3 35.3 1.0 O7 A:ZTP503 4.3 32.2 1.0 O1 A:ZTP503 4.4 32.5 1.0 CZ A:ARG244 4.5 34.4 1.0 CB A:ASP246 4.5 21.1 1.0 O3 A:ZTP503 4.6 31.5 1.0 O6 A:ZTP503 4.6 31.9 1.0 O A:HOH81 4.8 43.9 1.0 CZ A:ARG267 4.9 25.7 1.0 CD A:ARG244 5.0 30.9 1.0

Y.Kawai, J.Marles-Wright, R.M.Cleverley, R.Emmins, S.Ishikawa, M.Kuwano, N.Heinz, N.K.Bui, C.N.Hoyland, N.Ogasawara, R.J.Lewis, W.Vollmer, R.A.Daniel, J.Errington. A Widespread Family of Bacterial Cell Wall Assembly Proteins. Embo J. V. 30 4931 2011.
ISSN: ISSN 0261-4189
PubMed: 21964069
DOI: 10.1038/EMBOJ.2011.358