Magnesium in PDB 3tnf: Lida From Legionella in Complex with Active RAB8A

The structure of Lida From Legionella in Complex with Active RAB8A, PDB code: 3tnf was solved by S.Schoebel, A.L.Cichy, R.S.Goody, A.Itzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.820, 103.820, 150.610, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 27.5

The binding sites of Magnesium atom in the Lida From Legionella in Complex with Active RAB8A (pdb code 3tnf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Lida From Legionella in Complex with Active RAB8A, PDB code: 3tnf:

Magnesium binding site 1 out of 1 in the Lida From Legionella in Complex with Active RAB8A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lida From Legionella in Complex with Active RAB8A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg199 b:50.6 occ:1.00 OG1 A:THR22 2.4 48.2 1.0 O2B A:GNP200 2.4 43.7 1.0 O2G A:GNP200 2.6 48.3 1.0 OG1 A:THR40 2.6 49.2 1.0 O A:THR64 3.0 41.6 1.0 OD1 A:ASP63 3.1 47.0 1.0 CB A:THR40 3.2 40.3 1.0 OD2 A:ASP63 3.5 42.4 1.0 PG A:GNP200 3.5 41.5 1.0 O3G A:GNP200 3.5 40.6 1.0 PB A:GNP200 3.5 44.2 1.0 CG A:ASP63 3.6 43.8 1.0 N A:THR22 3.6 45.0 1.0 CE A:LYS21 3.7 45.3 1.0 CB A:THR22 3.7 46.5 1.0 CG2 A:THR40 3.8 41.0 1.0 CB A:LYS21 3.9 42.0 1.0 N3B A:GNP200 3.9 53.0 1.0 O1B A:GNP200 4.0 41.6 1.0 CA A:THR22 4.1 44.5 1.0 C A:THR64 4.2 45.4 1.0 NZ A:LYS21 4.2 45.9 1.0 C A:LYS21 4.4 44.9 1.0 CA A:LYS21 4.6 44.3 1.0 CA A:THR40 4.6 46.1 1.0 N A:THR64 4.8 45.8 1.0 CD A:LYS21 4.8 46.5 1.0 N A:THR40 4.8 45.7 1.0 CG2 A:THR22 4.8 38.2 1.0 O3A A:GNP200 4.8 41.8 1.0 CG A:LYS21 4.8 44.0 1.0 O1G A:GNP200 4.9 48.2 1.0 O A:HOH188 4.9 44.5 1.0 CA A:ALA65 5.0 51.6 1.0 N A:LYS21 5.0 47.6 1.0 N A:ALA65 5.0 42.2 1.0

S.Schoebel, A.L.Cichy, R.S.Goody, A.Itzen. Protein Lida From Legionella Is A Rab Gtpase Supereffector. Proc.Natl.Acad.Sci.Usa V. 108 17945 2011.
ISSN: ISSN 0027-8424
PubMed: 22011575
DOI: 10.1073/PNAS.1113133108