Magnesium in PDB 3tr4: Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii

Enzymatic activity of Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii

All present enzymatic activity of Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii:
3.6.1.1;

Protein crystallography data

The structure of Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii, PDB code: 3tr4 was solved by J.Cheung, M.C.Franklin, M.Rudolph, M.Cassidy, E.Gary, F.Burshteyn, J.Love, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	29.46 / 2.00
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	61.910, 108.654, 74.664, 90.00, 104.44, 90.00
*R / R_free (%)*	18.1 / 22.6

Other elements in 3tr4:

The structure of Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii also contains other interesting chemical elements:

Manganese

(Mn)

6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii (pdb code 3tr4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii, PDB code: 3tr4:

Magnesium binding site 1 out of 1 in 3tr4

Go back to

Magnesium Binding Sites List in 3tr4

Magnesium binding site 1 out of 1 in the Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Inorganic Pyrophosphatase (Ppa) From Coxiella Burnetii within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg177 b:39.6 occ:1.00	O	A:LYS147	2.7	54.2	1.0
	O	A:GLU144	2.7	38.3	1.0
	O	A:LYS141	2.8	32.7	1.0
	O	A:HOH196	3.0	46.0	1.0
	O	A:ASP142	3.1	35.3	1.0
	C	A:ASP142	3.6	38.1	1.0
	C	A:GLU144	3.6	35.7	1.0
	C	A:LYS141	3.9	34.1	1.0
	CA	A:ASP142	3.9	35.3	1.0
	C	A:LYS147	3.9	47.4	1.0
	N	A:GLU144	4.0	33.2	1.0
	CA	A:GLU144	4.4	43.2	1.0
	N	A:ASP142	4.4	33.4	1.0
	N	A:LYS147	4.4	52.3	1.0
	N	A:LEU143	4.5	33.6	1.0
	N	A:PRO145	4.5	37.3	1.0
	CA	A:LYS147	4.7	48.8	1.0
	CA	A:PRO145	4.7	44.6	1.0
	N	A:ASN146	4.7	44.2	1.0
	O	A:HOH242	4.8	55.0	1.0
	C	A:LEU143	4.8	34.9	1.0
	CB	A:GLU144	4.9	39.9	1.0
	N	A:TRP148	4.9	43.4	1.0
	C	A:PRO145	4.9	48.3	1.0
	CA	A:TRP148	5.0	50.3	1.0
	CB	A:TRP148	5.0	54.9	1.0

Reference:

M.C.Franklin, J.Cheung, M.J.Rudolph, F.Burshteyn, M.Cassidy, E.Gary, B.Hillerich, Z.K.Yao, P.R.Carlier, M.Totrov, J.D.Love. Structural Genomics For Drug Design Against the Pathogen Coxiella Burnetii. Proteins V. 83 2124 2015.
ISSN: ISSN 0887-3585
PubMed: 26033498
DOI: 10.1002/PROT.24841

Page generated: Thu Aug 15 12:11:46 2024

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