Magnesium in PDB 3tso: Structure of the Cancer Associated RAB25 Protein in Complex with FIP2

The structure of Structure of the Cancer Associated RAB25 Protein in Complex with FIP2, PDB code: 3tso was solved by S.Oda, P.Y.Lall, M.W.Mccaffrey, A.R.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.18 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	43.310, 64.210, 65.940, 113.25, 107.24, 99.46
R / Rfree (%)	19.9 / 24.9

The binding sites of Magnesium atom in the Structure of the Cancer Associated RAB25 Protein in Complex with FIP2 (pdb code 3tso). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Cancer Associated RAB25 Protein in Complex with FIP2, PDB code: 3tso:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Cancer Associated RAB25 Protein in Complex with FIP2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Cancer Associated RAB25 Protein in Complex with FIP2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg200 b:18.6 occ:1.00 OG1 A:THR44 2.0 17.6 1.0 O2G A:GNP201 2.0 18.8 1.0 O2B A:GNP201 2.0 19.9 1.0 O A:HOH377 2.0 13.2 1.0 OG1 A:THR26 2.1 18.8 1.0 O A:HOH368 2.2 17.7 1.0 CB A:THR44 3.1 17.7 1.0 PB A:GNP201 3.2 16.9 1.0 CB A:THR26 3.2 17.4 1.0 PG A:GNP201 3.2 18.6 1.0 N3B A:GNP201 3.4 17.8 1.0 N A:THR44 3.7 17.4 1.0 O3G A:GNP201 3.9 16.8 1.0 CA A:THR44 4.0 16.7 1.0 OD2 A:ASP67 4.0 16.9 1.0 N A:THR26 4.1 14.7 1.0 O A:HOH313 4.1 22.0 1.0 O2A A:GNP201 4.1 16.5 1.0 CA A:THR26 4.2 17.7 1.0 OD1 A:ASP67 4.2 18.4 1.0 CG2 A:THR44 4.2 15.8 1.0 CG2 A:THR26 4.2 15.5 1.0 O3A A:GNP201 4.3 16.0 1.0 O1B A:GNP201 4.3 13.7 1.0 O1G A:GNP201 4.4 16.5 1.0 CG A:ASP67 4.5 14.9 1.0 PA A:GNP201 4.5 16.4 1.0 O1A A:GNP201 4.8 18.5 1.0 C A:THR43 4.8 20.8 1.0 O A:HOH329 4.8 26.4 1.0 O A:ARG42 4.9 30.3 1.0 O A:THR68 4.9 16.0 1.0

Magnesium binding site 2 out of 2 in the Structure of the Cancer Associated RAB25 Protein in Complex with FIP2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Cancer Associated RAB25 Protein in Complex with FIP2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg200 b:17.6 occ:1.00 O2B B:GNP201 2.0 13.9 1.0 O B:HOH353 2.1 15.0 1.0 OG1 B:THR26 2.1 18.1 1.0 O B:HOH352 2.1 18.2 1.0 O2G B:GNP201 2.1 18.7 1.0 OG1 B:THR44 2.1 19.9 1.0 CB B:THR26 3.2 18.6 1.0 PG B:GNP201 3.2 22.3 1.0 PB B:GNP201 3.2 18.8 1.0 CB B:THR44 3.2 17.8 1.0 N3B B:GNP201 3.4 18.5 1.0 N B:THR44 3.8 20.1 1.0 O3G B:GNP201 3.9 18.5 1.0 N B:THR26 4.0 17.0 1.0 OD2 B:ASP67 4.0 20.8 1.0 CA B:THR44 4.1 18.6 1.0 CA B:THR26 4.2 17.8 1.0 O2A B:GNP201 4.2 19.7 1.0 OD1 B:ASP67 4.2 24.0 1.0 CG2 B:THR26 4.3 18.1 1.0 O1B B:GNP201 4.3 16.6 1.0 O B:HOH308 4.3 21.3 1.0 O1G B:GNP201 4.3 22.1 1.0 CG2 B:THR44 4.3 17.7 1.0 O3A B:GNP201 4.4 19.5 1.0 CG B:ASP67 4.5 18.7 1.0 PA B:GNP201 4.6 20.4 1.0 O B:ARG42 4.7 26.5 1.0 O B:THR68 4.7 19.3 1.0 C B:THR43 4.8 22.3 1.0 O1A B:GNP201 4.9 22.4 1.0

S.Oda, P.Y.Lall, M.W.Mccaffrey, A.R.Khan. Structure of the Cancer Associated RAB25 Protein in Complex with FIP2 To Be Published.