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Magnesium in PDB 3tsp: Crystal Structure of E. Coli Hypf

Protein crystallography data

The structure of Crystal Structure of E. Coli Hypf, PDB code: 3tsp was solved by S.Petkun, R.Shi, Y.Li, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 99.94 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.329, 77.677, 199.890, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 20.6

Other elements in 3tsp:

The structure of Crystal Structure of E. Coli Hypf also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of E. Coli Hypf (pdb code 3tsp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of E. Coli Hypf, PDB code: 3tsp:

Magnesium binding site 1 out of 1 in 3tsp

Go back to Magnesium Binding Sites List in 3tsp
Magnesium binding site 1 out of 1 in the Crystal Structure of E. Coli Hypf


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of E. Coli Hypf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg4

b:15.0
occ:1.00
O A:TYR282 2.3 15.0 1.0
O A:HOH773 2.4 13.5 1.0
O A:HOH65 2.5 14.6 1.0
O A:HOH752 2.6 12.3 1.0
C A:TYR282 3.4 15.1 1.0
O A:GLY259 4.0 13.4 1.0
CA A:GLY259 4.1 14.5 1.0
CA A:TYR282 4.2 16.2 1.0
C A:GLY259 4.2 14.5 1.0
CD A:PRO284 4.3 14.2 1.0
N A:VAL283 4.5 14.0 1.0
CB A:TYR282 4.6 15.9 1.0
O A:ASP258 4.6 16.7 1.0
CA A:VAL283 4.7 13.3 1.0
O A:HOH11 4.8 17.1 1.0

Reference:

S.Petkun, R.Shi, Y.Li, A.Asinas, C.Munger, L.Zhang, M.Waclawek, B.Soboh, R.G.Sawers, M.Cygler. Structure of Hydrogenase Maturation Protein Hypf with Reaction Intermediates Shows Two Active Sites. Structure V. 19 1773 2011.
ISSN: ISSN 0969-2126
PubMed: 22153500
DOI: 10.1016/J.STR.2011.09.023
Page generated: Mon Dec 14 08:55:00 2020

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