Atomistry » Magnesium » PDB 3tnf-3twh » 3ttd
Atomistry »
  Magnesium »
    PDB 3tnf-3twh »
      3ttd »

Magnesium in PDB 3ttd: Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate

Protein crystallography data

The structure of Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate, PDB code: 3ttd was solved by S.Petkun, R.Shi, Y.Li, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.32 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.446, 77.730, 200.635, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 21.4

Other elements in 3ttd:

The structure of Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate (pdb code 3ttd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate, PDB code: 3ttd:

Magnesium binding site 1 out of 1 in 3ttd

Go back to Magnesium Binding Sites List in 3ttd
Magnesium binding site 1 out of 1 in the Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of E. Coli Hypf with Amp-Cpp and Carbamoyl Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg748

b:41.9
occ:1.00
O A:TYR282 2.3 17.7 1.0
O A:HOH52 2.6 16.9 1.0
C A:TYR282 3.4 17.2 1.0
O A:GLY259 4.0 15.5 1.0
CA A:GLY259 4.1 17.1 1.0
CA A:TYR282 4.2 18.4 1.0
C A:GLY259 4.2 17.2 1.0
CD A:PRO284 4.3 16.4 1.0
N A:VAL283 4.4 16.9 1.0
CB A:TYR282 4.5 18.8 1.0
O A:ASP258 4.6 20.6 1.0
CA A:VAL283 4.7 16.2 1.0
O A:HOH22 4.8 19.2 1.0

Reference:

S.Petkun, R.Shi, Y.Li, A.Asinas, C.Munger, L.Zhang, M.Waclawek, B.Soboh, R.G.Sawers, M.Cygler. Structure of Hydrogenase Maturation Protein Hypf with Reaction Intermediates Shows Two Active Sites. Structure V. 19 1773 2011.
ISSN: ISSN 0969-2126
PubMed: 22153500
DOI: 10.1016/J.STR.2011.09.023
Page generated: Thu Aug 15 12:12:54 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy