Atomistry » Magnesium » PDB 3u8u-3umo » 3u8x
Atomistry »
  Magnesium »
    PDB 3u8u-3umo »
      3u8x »

Magnesium in PDB 3u8x: Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp

Protein crystallography data

The structure of Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp, PDB code: 3u8x was solved by L.Renault, C.Husson, M.F.Carlier, D.Didry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.70 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.011, 75.326, 128.866, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp (pdb code 3u8x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp, PDB code: 3u8x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3u8x

Go back to Magnesium Binding Sites List in 3u8x
Magnesium binding site 1 out of 2 in the Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:10.3
occ:1.00
O3G A:ATP501 1.9 11.0 1.0
O1G A:ATP501 2.1 39.8 1.0
O1B A:ATP501 2.1 12.1 1.0
PG A:ATP501 2.5 38.9 1.0
PB A:ATP501 3.3 19.1 1.0
O3B A:ATP501 3.4 19.6 1.0
O2G A:ATP501 3.8 33.9 1.0
OE1 A:GLN137 3.9 15.5 1.0
O1A A:ATP501 4.0 12.2 1.0
OD2 A:ASP154 4.1 23.7 1.0
O3A A:ATP501 4.1 20.0 1.0
NZ A:LYS18 4.2 21.3 1.0
OD1 A:ASP11 4.3 24.1 1.0
CD A:GLN137 4.4 18.1 1.0
OD1 A:ASP154 4.4 24.2 1.0
CA A:GLY13 4.4 21.4 1.0
OD2 A:ASP11 4.4 19.5 1.0
O2B A:ATP501 4.5 15.5 1.0
PA A:ATP501 4.6 16.6 1.0
CG A:ASP154 4.6 18.6 1.0
NE2 A:GLN137 4.9 17.9 1.0
CG A:ASP11 4.9 21.2 1.0
CG2 A:VAL339 4.9 13.5 1.0
CA A:GLY156 5.0 13.4 1.0
O2A A:ATP501 5.0 14.2 1.0
N A:SER14 5.0 20.7 1.0

Magnesium binding site 2 out of 2 in 3u8x

Go back to Magnesium Binding Sites List in 3u8x
Magnesium binding site 2 out of 2 in the Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Chimera Containing the N-Terminal Domain (Residues 8-29) of Drosophila Ciboulot and the C-Terminal Domain (Residues 18-44) of Bovine Thymosin-BETA4, Bound to G-Actin-Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:5.5
occ:1.00
OD2 C:ASP154 2.6 13.3 1.0
OE1 C:GLN137 3.1 10.9 1.0
O3G C:ATP501 3.1 10.9 1.0
CB C:GLN137 3.5 6.3 1.0
CD C:GLN137 3.5 9.5 1.0
CG C:GLN137 3.7 6.6 1.0
CG2 C:VAL339 3.7 4.5 1.0
CG C:ASP154 3.8 16.6 1.0
O1B C:ATP501 3.9 14.8 1.0
NE2 C:GLN137 4.5 4.4 1.0
OD1 C:ASP154 4.5 28.4 1.0
CB C:VAL339 4.6 5.9 1.0
PG C:ATP501 4.7 32.8 1.0
OD1 C:ASP11 4.7 7.5 1.0
CG1 C:VAL339 4.8 5.8 1.0
CB C:ASP154 4.9 7.8 1.0
CA C:GLN137 4.9 8.9 1.0

Reference:

D.Didry, F.X.Cantrelle, C.Husson, P.Roblin, A.M.Moorthy, J.Perez, C.Le Clainche, M.Hertzog, E.Guittet, M.F.Carlier, C.Van Heijenoort, L.Renault. How A Single Residue in Individual Beta-Thymosin/WH2 Domains Controls Their Functions in Actin Assembly Embo J. V. 31 1000 2012.
ISSN: ISSN 0261-4189
PubMed: 22193718
DOI: 10.1038/EMBOJ.2011.461
Page generated: Thu Aug 15 12:26:51 2024

Last articles

Na in 6D9B
Na in 6D99
Na in 6D9A
Na in 6D5L
Na in 6D55
Na in 6D5J
Na in 6D5E
Na in 6D56
Na in 6D64
Na in 6D59
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy