Atomistry » Magnesium » PDB 3u8u-3umo » 3u9x
Atomistry »
  Magnesium »
    PDB 3u8u-3umo »
      3u9x »

Magnesium in PDB 3u9x: Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins

Protein crystallography data

The structure of Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins, PDB code: 3u9x was solved by P.Thiel, L.Roeglin, O.Kohlbacher, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.54 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.220, 112.140, 62.660, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 18.8

Other elements in 3u9x:

The structure of Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins (pdb code 3u9x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins, PDB code: 3u9x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3u9x

Go back to Magnesium Binding Sites List in 3u9x
Magnesium binding site 1 out of 2 in the Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg232

b:12.3
occ:0.50
O A:HOH281 2.2 14.6 0.3
OE1 A:GLU2 2.5 18.6 1.0
O A:HOH403 2.6 18.7 1.0
O A:HOH281 2.8 28.6 0.7
CD A:GLU2 3.5 16.6 1.0
OE2 A:GLU2 3.9 16.4 1.0
O A:HOH404 4.3 12.9 1.0
O A:HOH405 4.5 46.0 1.0
O A:HOH372 4.5 13.9 1.0
CG A:GLU2 4.8 13.7 1.0
CA A:GLU2 4.9 10.0 1.0
N A:ARG3 4.9 9.5 1.0

Magnesium binding site 2 out of 2 in 3u9x

Go back to Magnesium Binding Sites List in 3u9x
Magnesium binding site 2 out of 2 in the Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg233

b:11.6
occ:1.00
OE1 A:GLU35 2.2 20.2 1.0
O A:HOH406 2.2 26.6 1.0
O A:GLU110 2.2 14.6 1.0
O A:HOH248 2.3 36.0 1.0
O A:HOH326 2.4 26.7 1.0
CD A:GLU35 2.8 21.1 1.0
OE2 A:GLU35 2.9 28.2 1.0
C A:GLU110 3.5 12.9 1.0
N A:GLY112 3.9 17.2 1.0
CG A:GLU35 4.3 16.1 1.0
CA A:GLU110 4.3 12.2 0.5
CA A:GLU110 4.3 12.0 0.5
N A:ALA111 4.4 12.6 1.0
CA A:ALA111 4.5 13.5 1.0
CB A:GLU110 4.5 12.1 0.5
C A:ALA111 4.6 15.8 1.0
O A:HOH397 4.6 32.1 1.0
OE1 A:GLU110 4.6 15.7 0.5
CB A:GLU110 4.6 11.7 0.5
CA A:GLY112 4.6 18.8 1.0
O A:HOH301 4.7 28.5 1.0
O A:HOH535 4.8 33.9 1.0
CL A:CL235 4.8 60.2 1.0

Reference:

L.Roglin, P.Thiel, O.Kohlbacher, C.Ottmann. Covalent Attachment of Pyridoxal-Phosphate Derivatives to 14-3-3 Proteins. Proc.Natl.Acad.Sci.Usa V. 109 E1051 2012.
ISSN: ISSN 0027-8424
PubMed: 22532669
DOI: 10.1073/PNAS.1116592109
Page generated: Mon Dec 14 08:56:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy