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Magnesium in PDB 3ugj: Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Enzymatic activity of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

All present enzymatic activity of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling:
6.3.5.3;

Protein crystallography data

The structure of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ugj was solved by M.Morar, A.S.Tanwar, S.Panjikar, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.78
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 145.983, 145.983, 141.149, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling (pdb code 3ugj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ugj:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3ugj

Go back to Magnesium Binding Sites List in 3ugj
Magnesium binding site 1 out of 3 in the Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2006

b:20.9
occ:1.00
 OD1 A:ASP884 2.2 12.1 1.0
O1B A:ADP2005 2.2 14.2 0.5
OD1 A:ASP679 2.2 8.3 1.0
OD1 A:ASN722 2.3 10.6 1.0
CG A:ASP884 3.0 13.5 1.0
CG A:ASP679 3.2 12.5 1.0
OD2 A:ASP884 3.2 10.8 1.0
PB A:ADP2005 3.3 8.6 0.5
CG A:ASN722 3.3 14.4 1.0
O3B A:ADP2005 3.6 13.3 0.5
ND2 A:ASN722 3.7 13.5 1.0
O2B A:ADP2005 3.8 13.1 0.5
CB A:ASP679 4.0 11.7 1.0
OG A:SER886 4.0 9.0 1.0
OD2 A:ASP679 4.0 10.0 1.0
O A:HOH1345 4.1 9.0 1.0
O A:ASP884 4.2 11.2 1.0
O A:HOH1394 4.3 22.5 1.0
NE2 A:HIS883 4.3 11.8 1.0
CD2 A:HIS883 4.3 10.9 1.0
O A:HOH1663 4.4 15.4 1.0
CB A:ASP884 4.4 12.2 1.0
CA A:ASP679 4.4 11.1 1.0
CB A:ASN722 4.6 12.3 1.0
N A:ASP884 4.6 12.8 1.0
O3A A:ADP2005 4.6 13.1 0.5
C A:ASP884 4.7 13.1 1.0
OE2 A:GLU718 4.7 11.0 1.0
CA A:ASP884 4.8 11.9 1.0
O A:HOH1445 4.9 13.2 1.0
CA A:ASN722 4.9 12.1 1.0
CB A:SER886 4.9 12.8 1.0

Magnesium binding site 2 out of 3 in 3ugj

Go back to Magnesium Binding Sites List in 3ugj
Magnesium binding site 2 out of 3 in the Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2007

b:21.3
occ:1.00
 OE2 A:GLU718 2.2 11.0 1.0
O A:HOH1300 2.3 24.6 1.0
O A:HOH1297 2.4 21.5 1.0
O3B A:ADP2005 2.4 13.3 0.5
CD A:GLU718 3.1 15.1 1.0
OE1 A:GLU718 3.3 12.6 1.0
PB A:ADP2005 3.6 8.6 0.5
O2B A:ADP2005 3.7 13.1 0.5
O A:HOH1534 4.1 13.6 1.0
O A:HOH1403 4.1 8.3 1.0
ND2 A:ASN722 4.2 13.5 1.0
O A:ILE697 4.3 8.4 1.0
O3A A:ADP2005 4.3 13.1 0.5
O1A A:ADP2005 4.4 13.8 0.5
OD2 A:ASP887 4.4 13.8 1.0
OE1 A:GLU699 4.5 19.1 1.0
CG A:GLU718 4.5 11.4 1.0
O A:GLU699 4.6 13.2 1.0
CB A:SER886 4.7 12.8 1.0
OG A:SER886 4.8 9.0 1.0
N A:GLU699 4.8 12.3 1.0
O1B A:ADP2005 4.8 14.2 0.5
CB A:TYR388 5.0 10.5 1.0
PA A:ADP2005 5.0 6.2 0.5

Magnesium binding site 3 out of 3 in 3ugj

Go back to Magnesium Binding Sites List in 3ugj
Magnesium binding site 3 out of 3 in the Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Formyl Glycinamide Ribonucletide Amidotransferase From Salmonella Typhimurum: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2008

b:21.5
occ:1.00
 O2A A:ADP2005 2.3 12.1 0.5
O A:HOH1394 2.4 22.5 1.0
O2B A:ADP2005 2.4 13.1 0.5
PA A:ADP2005 3.5 6.2 0.5
PB A:ADP2005 3.6 8.6 0.5
O3A A:ADP2005 3.9 13.1 0.5
OE2 A:GLU896 4.0 9.3 1.0
O A:HOH1400 4.0 9.7 1.0
O A:HOH1297 4.1 21.5 1.0
O1A A:ADP2005 4.1 13.8 0.5
OE1 A:GLU896 4.1 8.7 1.0
OG A:SER886 4.1 9.0 1.0
O1B A:ADP2005 4.2 14.2 0.5
O A:HOH1445 4.3 13.2 1.0
O A:ASP887 4.4 8.9 1.0
O A:VAL646 4.5 8.9 1.0
CD A:GLU896 4.5 11.6 1.0
O A:THR645 4.6 11.2 1.0
O A:HOH1345 4.6 9.0 1.0
CB A:ASP887 4.7 12.8 1.0
OD2 A:ASP887 4.7 13.8 1.0
O5' A:ADP2005 4.8 12.0 0.5
CG1 A:VAL892 4.9 13.9 1.0
O3B A:ADP2005 4.9 13.3 0.5
CA A:VAL646 4.9 12.4 1.0

Reference:

A.S.Tanwar, M.Morar, S.Panjikar, R.Anand. Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of Atp Complexation and the Glutaminase Domain in Catalytic Coupling Acta Crystallogr.,Sect.D V. 68 627 2012.
ISSN: ISSN 0907-4449
PubMed: 22683785
DOI: 10.1107/S0907444912006543
Page generated: Thu Aug 15 12:30:20 2024

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