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Magnesium in PDB 3ujn: Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Enzymatic activity of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

All present enzymatic activity of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling:
6.3.5.3;

Protein crystallography data

The structure of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ujn was solved by R.Anand, M.Morar, A.S.Tanwar, S.Panjikar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.98
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 146.958, 146.958, 141.200, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling (pdb code 3ujn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ujn:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3ujn

Go back to Magnesium Binding Sites List in 3ujn
Magnesium binding site 1 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2006

b:15.5
occ:1.00
 OE2 A:GLU718 2.5 23.4 1.0
O3B A:ADP2005 2.7 1.0 0.5
CD A:GLU718 3.4 22.8 1.0
PB A:ADP2005 3.6 1.0 0.5
OE1 A:GLU718 3.7 24.4 1.0
O3A A:ADP2005 3.7 1.0 0.5
O2B A:ADP2005 3.8 1.0 0.5
O A:ILE697 4.1 16.3 1.0
O1A A:ADP2005 4.2 1.0 0.5
CB A:TYR388 4.4 18.9 1.0
OD2 A:ASP887 4.6 30.9 1.0
ND2 A:ASN722 4.6 20.8 1.0
PA A:ADP2005 4.6 1.0 0.5
O A:GLU699 4.6 23.9 1.0
OE1 A:GLU699 4.6 25.3 1.0
CG A:GLU718 4.8 22.9 1.0
N A:GLU699 4.9 23.1 1.0
C A:ILE697 4.9 15.8 1.0
O1B A:ADP2005 5.0 1.0 0.5

Magnesium binding site 2 out of 3 in 3ujn

Go back to Magnesium Binding Sites List in 3ujn
Magnesium binding site 2 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2007

b:7.2
occ:1.00
 O2A A:ADP2005 2.4 1.0 0.5
O2B A:ADP2005 2.5 1.0 0.5
OG A:SER886 3.2 26.1 1.0
PA A:ADP2005 3.7 1.0 0.5
PB A:ADP2005 3.7 1.0 0.5
OE1 A:GLU896 3.8 19.5 1.0
OE2 A:GLU896 4.0 19.6 1.0
O1B A:ADP2005 4.2 1.0 0.5
O3A A:ADP2005 4.2 1.0 0.5
O1A A:ADP2005 4.3 1.0 0.5
O A:ASP887 4.4 26.5 1.0
CD A:GLU896 4.4 19.8 1.0
O A:HOH1533 4.4 26.8 1.0
OD2 A:ASP887 4.4 30.9 1.0
CB A:ASP887 4.5 28.7 1.0
N A:ASP887 4.5 27.1 1.0
CB A:SER886 4.5 24.0 1.0
O A:VAL646 4.6 19.1 1.0
CG1 A:VAL892 4.7 19.1 1.0
O A:THR645 4.7 24.4 1.0
MG A:MG2008 4.8 11.2 1.0
CA A:ASP887 4.9 26.7 1.0
O5' A:ADP2005 5.0 1.0 0.5
CG A:ASP887 5.0 30.1 1.0
O3B A:ADP2005 5.0 1.0 0.5

Magnesium binding site 3 out of 3 in 3ujn

Go back to Magnesium Binding Sites List in 3ujn
Magnesium binding site 3 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2008

b:11.2
occ:1.00
 O1B A:ADP2005 2.4 1.0 0.5
OD1 A:ASP679 2.7 22.1 1.0
OD1 A:ASN722 2.7 19.5 1.0
OD1 A:ASP884 2.8 24.4 1.0
PB A:ADP2005 3.1 1.0 0.5
OD2 A:ASP884 3.1 20.7 1.0
CG A:ASP884 3.2 22.5 1.0
O2B A:ADP2005 3.2 1.0 0.5
O3B A:ADP2005 3.3 1.0 0.5
CG A:ASN722 3.6 20.5 1.0
OG A:SER886 3.6 26.1 1.0
ND2 A:ASN722 3.7 20.8 1.0
CG A:ASP679 3.9 23.7 1.0
O A:ASP884 4.0 23.5 1.0
O A:HOH1533 4.0 26.8 1.0
CB A:SER886 4.0 24.0 1.0
NE2 A:HIS883 4.3 25.5 1.0
CD2 A:HIS883 4.5 24.0 1.0
C A:ASP884 4.5 22.7 1.0
CB A:ASP884 4.5 21.7 1.0
OE2 A:GLU718 4.6 23.4 1.0
O3A A:ADP2005 4.6 1.0 0.5
N A:ASP884 4.7 23.1 1.0
CB A:ASP679 4.7 22.4 1.0
OD2 A:ASP679 4.7 23.2 1.0
CA A:ASP884 4.7 22.6 1.0
MG A:MG2007 4.8 7.2 1.0
CB A:ASN722 5.0 21.5 1.0
CA A:ASP679 5.0 21.6 1.0

Reference:

A.S.Tanwar, M.Morar, S.Panjikar, R.Anand. Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of Atp Complexation and the Glutaminase Domain in Catalytic Coupling Acta Crystallogr.,Sect.D V. 68 627 2012.
ISSN: ISSN 0907-4449
PubMed: 22683785
DOI: 10.1107/S0907444912006543
Page generated: Thu Aug 15 12:33:30 2024

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