Magnesium in PDB 3ujn: Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Enzymatic activity of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

All present enzymatic activity of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling:
6.3.5.3;

Protein crystallography data

The structure of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ujn was solved by R.Anand, M.Morar, A.S.Tanwar, S.Panjikar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	20.00 / 2.98
*Space group*	P 6₅
*Cell size a, b, c (Å), α, β, γ (°)*	146.958, 146.958, 141.200, 90.00, 90.00, 120.00
*R / R_free (%)*	20.8 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling (pdb code 3ujn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3ujn:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3ujn

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Magnesium Binding Sites List in 3ujn

Magnesium binding site 1 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2006 b:15.5 occ:1.00	OE2	A:GLU718	2.5	23.4	1.0
	O3B	A:ADP2005	2.7	1.0	0.5
	CD	A:GLU718	3.4	22.8	1.0
	PB	A:ADP2005	3.6	1.0	0.5
	OE1	A:GLU718	3.7	24.4	1.0
	O3A	A:ADP2005	3.7	1.0	0.5
	O2B	A:ADP2005	3.8	1.0	0.5
	O	A:ILE697	4.1	16.3	1.0
	O1A	A:ADP2005	4.2	1.0	0.5
	CB	A:TYR388	4.4	18.9	1.0
	OD2	A:ASP887	4.6	30.9	1.0
	ND2	A:ASN722	4.6	20.8	1.0
	PA	A:ADP2005	4.6	1.0	0.5
	O	A:GLU699	4.6	23.9	1.0
	OE1	A:GLU699	4.6	25.3	1.0
	CG	A:GLU718	4.8	22.9	1.0
	N	A:GLU699	4.9	23.1	1.0
	C	A:ILE697	4.9	15.8	1.0
	O1B	A:ADP2005	5.0	1.0	0.5

Magnesium binding site 2 out of 3 in 3ujn

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Magnesium Binding Sites List in 3ujn

Magnesium binding site 2 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2007 b:7.2 occ:1.00	O2A	A:ADP2005	2.4	1.0	0.5
	O2B	A:ADP2005	2.5	1.0	0.5
	OG	A:SER886	3.2	26.1	1.0
	PA	A:ADP2005	3.7	1.0	0.5
	PB	A:ADP2005	3.7	1.0	0.5
	OE1	A:GLU896	3.8	19.5	1.0
	OE2	A:GLU896	4.0	19.6	1.0
	O1B	A:ADP2005	4.2	1.0	0.5
	O3A	A:ADP2005	4.2	1.0	0.5
	O1A	A:ADP2005	4.3	1.0	0.5
	O	A:ASP887	4.4	26.5	1.0
	CD	A:GLU896	4.4	19.8	1.0
	O	A:HOH1533	4.4	26.8	1.0
	OD2	A:ASP887	4.4	30.9	1.0
	CB	A:ASP887	4.5	28.7	1.0
	N	A:ASP887	4.5	27.1	1.0
	CB	A:SER886	4.5	24.0	1.0
	O	A:VAL646	4.6	19.1	1.0
	CG1	A:VAL892	4.7	19.1	1.0
	O	A:THR645	4.7	24.4	1.0
	MG	A:MG2008	4.8	11.2	1.0
	CA	A:ASP887	4.9	26.7	1.0
	O5'	A:ADP2005	5.0	1.0	0.5
	CG	A:ASP887	5.0	30.1	1.0
	O3B	A:ADP2005	5.0	1.0	0.5

Magnesium binding site 3 out of 3 in 3ujn

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Magnesium Binding Sites List in 3ujn

Magnesium binding site 3 out of 3 in the Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Formyl Glycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium : Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2008 b:11.2 occ:1.00	O1B	A:ADP2005	2.4	1.0	0.5
	OD1	A:ASP679	2.7	22.1	1.0
	OD1	A:ASN722	2.7	19.5	1.0
	OD1	A:ASP884	2.8	24.4	1.0
	PB	A:ADP2005	3.1	1.0	0.5
	OD2	A:ASP884	3.1	20.7	1.0
	CG	A:ASP884	3.2	22.5	1.0
	O2B	A:ADP2005	3.2	1.0	0.5
	O3B	A:ADP2005	3.3	1.0	0.5
	CG	A:ASN722	3.6	20.5	1.0
	OG	A:SER886	3.6	26.1	1.0
	ND2	A:ASN722	3.7	20.8	1.0
	CG	A:ASP679	3.9	23.7	1.0
	O	A:ASP884	4.0	23.5	1.0
	O	A:HOH1533	4.0	26.8	1.0
	CB	A:SER886	4.0	24.0	1.0
	NE2	A:HIS883	4.3	25.5	1.0
	CD2	A:HIS883	4.5	24.0	1.0
	C	A:ASP884	4.5	22.7	1.0
	CB	A:ASP884	4.5	21.7	1.0
	OE2	A:GLU718	4.6	23.4	1.0
	O3A	A:ADP2005	4.6	1.0	0.5
	N	A:ASP884	4.7	23.1	1.0
	CB	A:ASP679	4.7	22.4	1.0
	OD2	A:ASP679	4.7	23.2	1.0
	CA	A:ASP884	4.7	22.6	1.0
	MG	A:MG2007	4.8	7.2	1.0
	CB	A:ASN722	5.0	21.5	1.0
	CA	A:ASP679	5.0	21.6	1.0

Reference:

A.S.Tanwar, M.Morar, S.Panjikar, R.Anand. Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of Atp Complexation and the Glutaminase Domain in Catalytic Coupling Acta Crystallogr.,Sect.D V. 68 627 2012.
ISSN: ISSN 0907-4449
PubMed: 22683785
DOI: 10.1107/S0907444912006543

Page generated: Thu Aug 15 12:33:30 2024

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