Magnesium in PDB 3umm: Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Enzymatic activity of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

All present enzymatic activity of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling:
6.3.5.3;

Protein crystallography data

The structure of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3umm was solved by R.Anand, M.Morar, A.S.Tanwar, S.Panjikar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.98 / 3.20
*Space group*	P 6₅
*Cell size a, b, c (Å), α, β, γ (°)*	148.680, 148.680, 142.050, 90.00, 90.00, 120.00
*R / R_free (%)*	19.6 / 27.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling (pdb code 3umm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3umm:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3umm

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Magnesium Binding Sites List in 3umm

Magnesium binding site 1 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2006 b:30.2 occ:1.00	O3B	A:ADP2005	2.2	30.3	0.5
	OE2	A:GLU718	2.2	30.5	1.0
	CD	A:GLU718	3.2	30.5	1.0
	O1A	A:ADP2005	3.4	30.3	0.5
	OE1	A:GLU718	3.6	30.5	1.0
	PB	A:ADP2005	3.7	30.3	0.5
	OD2	A:ASP887	3.8	33.4	1.0
	OE1	A:GLU699	4.2	36.9	1.0
	O3A	A:ADP2005	4.2	30.3	0.5
	O	A:GLU699	4.3	19.9	1.0
	O2B	A:ADP2005	4.3	30.3	0.5
	PA	A:ADP2005	4.4	30.3	0.5
	O	A:ILE697	4.5	19.3	1.0
	CB	A:TYR388	4.6	24.6	1.0
	CG	A:GLU718	4.6	30.5	1.0
	O1B	A:ADP2005	4.6	30.3	0.5
	OG	A:SER886	4.7	44.8	1.0
	ND2	A:ASN722	4.8	35.0	1.0
	CG	A:ASP887	4.9	33.4	1.0
	CB	A:SER886	5.0	44.8	1.0

Magnesium binding site 2 out of 3 in 3umm

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Magnesium Binding Sites List in 3umm

Magnesium binding site 2 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2007 b:30.2 occ:1.00	O2A	A:ADP2005	2.2	30.3	0.5
	O2B	A:ADP2005	2.6	30.3	0.5
	PA	A:ADP2005	3.4	30.3	0.5
	OG	A:SER886	3.6	44.8	1.0
	PB	A:ADP2005	3.7	30.3	0.5
	O3A	A:ADP2005	3.8	30.3	0.5
	O1A	A:ADP2005	4.0	30.3	0.5
	OD2	A:ASP887	4.0	33.4	1.0
	CB	A:ASP887	4.2	33.4	1.0
	O3B	A:ADP2005	4.2	30.3	0.5
	OE2	A:GLU896	4.2	21.3	1.0
	O	A:ASP887	4.2	33.5	1.0
	OE1	A:GLU896	4.4	21.3	1.0
	O	A:THR645	4.6	18.1	1.0
	O5'	A:ADP2005	4.6	30.3	1.0
	CG	A:ASP887	4.6	33.4	1.0
	N	A:ASP887	4.6	33.5	1.0
	CD	A:GLU896	4.8	21.3	1.0
	MG	A:MG2008	4.8	30.2	1.0
	CA	A:ASP887	4.8	33.5	1.0
	O	A:VAL646	4.9	14.7	1.0
	CB	A:SER886	4.9	44.8	1.0
	O1B	A:ADP2005	5.0	30.3	0.5
	C	A:ASP887	5.0	33.5	1.0
	C5'	A:ADP2005	5.0	30.3	1.0

Magnesium binding site 3 out of 3 in 3umm

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Magnesium Binding Sites List in 3umm

Magnesium binding site 3 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg2008 b:30.2 occ:1.00	O1B	A:ADP2005	2.2	30.3	0.5
	OD1	A:ASP884	2.2	29.8	1.0
	O2B	A:ADP2005	2.3	30.3	0.5
	OD1	A:ASP679	2.4	26.5	1.0
	OD1	A:ASN722	2.5	35.0	1.0
	PB	A:ADP2005	2.6	30.3	0.5
	OD2	A:ASP884	2.9	29.8	1.0
	CG	A:ASP884	2.9	29.8	1.0
	CG	A:ASN722	3.5	35.0	1.0
	O3B	A:ADP2005	3.5	30.3	0.5
	CG	A:ASP679	3.5	26.5	1.0
	ND2	A:ASN722	3.7	35.0	1.0
	OG	A:SER886	3.9	44.8	1.0
	O3A	A:ADP2005	3.9	30.3	0.5
	O	A:HOH1563	4.0	28.7	1.0
	OD2	A:ASP679	4.3	26.5	1.0
	CB	A:ASP884	4.4	29.8	1.0
	CB	A:ASP679	4.5	26.5	1.0
	NE2	A:HIS883	4.5	19.9	1.0
	CD2	A:HIS883	4.5	19.9	1.0
	OE2	A:GLU718	4.6	30.5	1.0
	CB	A:SER886	4.6	44.8	1.0
	O	A:ASP884	4.7	10.6	1.0
	MG	A:MG2007	4.8	30.2	1.0
	C	A:ASP884	4.9	10.6	1.0
	CA	A:ASP679	4.9	36.1	1.0
	CB	A:ASN722	4.9	35.0	1.0
	N	A:ASP884	5.0	10.6	1.0

Reference:

A.S.Tanwar, M.Morar, S.Panjikar, R.Anand. Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of Atp Complexation and the Glutaminase Domain in Catalytic Coupling Acta Crystallogr.,Sect.D V. 68 627 2012.
ISSN: ISSN 0907-4449
PubMed: 22683785
DOI: 10.1107/S0907444912006543

Page generated: Thu Aug 15 12:35:31 2024

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