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Magnesium in PDB 3umm: Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

Enzymatic activity of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling

All present enzymatic activity of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling:
6.3.5.3;

Protein crystallography data

The structure of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3umm was solved by R.Anand, M.Morar, A.S.Tanwar, S.Panjikar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.98 / 3.20
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 148.680, 148.680, 142.050, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 27.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling (pdb code 3umm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling, PDB code: 3umm:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3umm

Go back to Magnesium Binding Sites List in 3umm
Magnesium binding site 1 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2006

b:30.2
occ:1.00
O3B A:ADP2005 2.2 30.3 0.5
OE2 A:GLU718 2.2 30.5 1.0
CD A:GLU718 3.2 30.5 1.0
O1A A:ADP2005 3.4 30.3 0.5
OE1 A:GLU718 3.6 30.5 1.0
PB A:ADP2005 3.7 30.3 0.5
OD2 A:ASP887 3.8 33.4 1.0
OE1 A:GLU699 4.2 36.9 1.0
O3A A:ADP2005 4.2 30.3 0.5
O A:GLU699 4.3 19.9 1.0
O2B A:ADP2005 4.3 30.3 0.5
PA A:ADP2005 4.4 30.3 0.5
O A:ILE697 4.5 19.3 1.0
CB A:TYR388 4.6 24.6 1.0
CG A:GLU718 4.6 30.5 1.0
O1B A:ADP2005 4.6 30.3 0.5
OG A:SER886 4.7 44.8 1.0
ND2 A:ASN722 4.8 35.0 1.0
CG A:ASP887 4.9 33.4 1.0
CB A:SER886 5.0 44.8 1.0

Magnesium binding site 2 out of 3 in 3umm

Go back to Magnesium Binding Sites List in 3umm
Magnesium binding site 2 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2007

b:30.2
occ:1.00
O2A A:ADP2005 2.2 30.3 0.5
O2B A:ADP2005 2.6 30.3 0.5
PA A:ADP2005 3.4 30.3 0.5
OG A:SER886 3.6 44.8 1.0
PB A:ADP2005 3.7 30.3 0.5
O3A A:ADP2005 3.8 30.3 0.5
O1A A:ADP2005 4.0 30.3 0.5
OD2 A:ASP887 4.0 33.4 1.0
CB A:ASP887 4.2 33.4 1.0
O3B A:ADP2005 4.2 30.3 0.5
OE2 A:GLU896 4.2 21.3 1.0
O A:ASP887 4.2 33.5 1.0
OE1 A:GLU896 4.4 21.3 1.0
O A:THR645 4.6 18.1 1.0
O5' A:ADP2005 4.6 30.3 1.0
CG A:ASP887 4.6 33.4 1.0
N A:ASP887 4.6 33.5 1.0
CD A:GLU896 4.8 21.3 1.0
MG A:MG2008 4.8 30.2 1.0
CA A:ASP887 4.8 33.5 1.0
O A:VAL646 4.9 14.7 1.0
CB A:SER886 4.9 44.8 1.0
O1B A:ADP2005 5.0 30.3 0.5
C A:ASP887 5.0 33.5 1.0
C5' A:ADP2005 5.0 30.3 1.0

Magnesium binding site 3 out of 3 in 3umm

Go back to Magnesium Binding Sites List in 3umm
Magnesium binding site 3 out of 3 in the Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of the Atp Complexation and Glutaminase Domain in Catalytic Coupling within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2008

b:30.2
occ:1.00
O1B A:ADP2005 2.2 30.3 0.5
OD1 A:ASP884 2.2 29.8 1.0
O2B A:ADP2005 2.3 30.3 0.5
OD1 A:ASP679 2.4 26.5 1.0
OD1 A:ASN722 2.5 35.0 1.0
PB A:ADP2005 2.6 30.3 0.5
OD2 A:ASP884 2.9 29.8 1.0
CG A:ASP884 2.9 29.8 1.0
CG A:ASN722 3.5 35.0 1.0
O3B A:ADP2005 3.5 30.3 0.5
CG A:ASP679 3.5 26.5 1.0
ND2 A:ASN722 3.7 35.0 1.0
OG A:SER886 3.9 44.8 1.0
O3A A:ADP2005 3.9 30.3 0.5
O A:HOH1563 4.0 28.7 1.0
OD2 A:ASP679 4.3 26.5 1.0
CB A:ASP884 4.4 29.8 1.0
CB A:ASP679 4.5 26.5 1.0
NE2 A:HIS883 4.5 19.9 1.0
CD2 A:HIS883 4.5 19.9 1.0
OE2 A:GLU718 4.6 30.5 1.0
CB A:SER886 4.6 44.8 1.0
O A:ASP884 4.7 10.6 1.0
MG A:MG2007 4.8 30.2 1.0
C A:ASP884 4.9 10.6 1.0
CA A:ASP679 4.9 36.1 1.0
CB A:ASN722 4.9 35.0 1.0
N A:ASP884 5.0 10.6 1.0

Reference:

A.S.Tanwar, M.Morar, S.Panjikar, R.Anand. Formylglycinamide Ribonucleotide Amidotransferase From Salmonella Typhimurium: Role of Atp Complexation and the Glutaminase Domain in Catalytic Coupling Acta Crystallogr.,Sect.D V. 68 627 2012.
ISSN: ISSN 0907-4449
PubMed: 22683785
DOI: 10.1107/S0907444912006543
Page generated: Thu Aug 15 12:35:31 2024

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