Magnesium in PDB 3uoa: Crystal Structure of the MALT1 Paracaspase (P21 Form)

The structure of Crystal Structure of the MALT1 Paracaspase (P21 Form), PDB code: 3uoa was solved by P.D.Jeffrey, J.W.Yu, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.41 / 1.75
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.475, 75.735, 87.831, 90.00, 88.98, 90.00
R / Rfree (%)	19.4 / 22.6

The binding sites of Magnesium atom in the Crystal Structure of the MALT1 Paracaspase (P21 Form) (pdb code 3uoa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the MALT1 Paracaspase (P21 Form), PDB code: 3uoa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the MALT1 Paracaspase (P21 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the MALT1 Paracaspase (P21 Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1 b:8.5 occ:1.00 OE2 C:GLU388 2.3 17.6 1.0 O C:GLU437 2.3 19.6 1.0 O C:HOH198 2.5 22.7 1.0 O C:HOH181 2.5 27.8 1.0 O C:HOH321 2.6 31.1 1.0 OE1 C:GLU388 2.6 19.1 1.0 O C:HOH739 2.7 42.2 1.0 CD C:GLU388 2.8 18.6 1.0 C C:GLU437 3.5 20.3 1.0 HA C:ASN438 3.7 19.4 1.0 HH21 C:ARG392 3.8 25.2 1.0 HB2 C:GLU437 3.9 28.5 1.0 HE C:ARG392 3.9 24.5 1.0 O C:HOH297 4.3 26.3 1.0 HA C:GLU437 4.3 27.3 1.0 CG C:GLU388 4.3 13.3 1.0 N C:ASN438 4.4 17.2 1.0 CA C:GLU437 4.4 22.8 1.0 CA C:ASN438 4.4 16.2 1.0 O C:HOH203 4.6 33.6 1.0 NH2 C:ARG392 4.6 21.1 1.0 CB C:GLU437 4.6 23.8 1.0 HG2 C:GLU388 4.7 16.0 1.0 HG3 C:GLU388 4.7 16.0 1.0 NE C:ARG392 4.7 20.5 1.0 O C:HOH43 4.9 33.0 1.0 C C:ASN438 4.9 18.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the MALT1 Paracaspase (P21 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the MALT1 Paracaspase (P21 Form) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg2 b:24.9 occ:1.00 O C:HOH260 2.4 26.4 1.0 O C:HOH224 2.6 54.0 1.0 OD1 C:ASP522 2.6 20.7 1.0 O C:HOH331 2.6 31.4 1.0 OD2 C:ASP522 2.7 28.8 1.0 CG C:ASP522 3.0 26.9 1.0 HG1 C:THR561 3.8 24.3 1.0 OG1 C:THR561 4.1 20.3 1.0 CB C:ASP522 4.5 19.4 1.0 HD3 C:PRO563 4.6 23.5 1.0 HB C:THR561 4.6 27.0 1.0 OD1 C:ASP562 4.7 19.5 1.0 HA C:ASP562 4.7 21.0 1.0 O C:HOH151 4.7 23.1 1.0 O C:HOH729 4.9 40.4 1.0 HB2 C:ASP522 4.9 23.2 1.0 HB3 C:ALA559 4.9 22.7 1.0 HB3 C:ASP522 4.9 23.2 1.0 CB C:THR561 5.0 22.5 1.0

J.W.Yu, P.D.Jeffrey, J.Y.Ha, X.Yang, Y.Shi. Crystal Structure of the Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 (MALT1) Paracaspase Region. Proc.Natl.Acad.Sci.Usa V. 108 21004 2011.
ISSN: ISSN 0027-8424
PubMed: 22158899
DOI: 10.1073/PNAS.1111708108