Magnesium in PDB 3v11: Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna

The structure of Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna, PDB code: 3v11 was solved by Y.Mechulam, E.Schmitt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.43 / 5.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	133.000, 133.000, 167.200, 90.00, 90.00, 120.00
R / Rfree (%)	26.2 / 34.4

The binding sites of Magnesium atom in the Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna (pdb code 3v11). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna, PDB code: 3v11:

Magnesium binding site 1 out of 1 in the Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Ternary Initiation Complex AIF2:Gdpnp:Methionylated Initiator Trna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:0.0 occ:1.00 OG1 A:THR23 2.7 0.0 1.0 O2A A:GNP502 2.9 0.0 1.0 O2B A:GNP502 2.9 0.0 1.0 OG1 A:THR46 3.0 0.0 1.0 N A:THR46 3.0 0.0 1.0 N3B A:GNP502 3.1 0.0 1.0 CB A:THR46 3.2 0.0 1.0 O2G A:GNP502 3.2 0.0 1.0 CB A:THR23 3.3 0.0 1.0 CE A:LYS36 3.3 0.0 1.0 PB A:GNP502 3.5 0.0 1.0 CA A:THR46 3.6 0.0 1.0 PG A:GNP502 3.6 0.0 1.0 PA A:GNP502 3.7 0.0 1.0 NZ A:LYS36 3.8 0.0 1.0 O1A A:GNP502 3.8 0.0 1.0 CG2 A:THR23 3.9 0.0 1.0 C A:MET45 4.0 0.0 1.0 O1G A:GNP502 4.0 0.0 1.0 O3A A:GNP502 4.0 0.0 1.0 CD A:LYS36 4.2 0.0 1.0 CB A:MET45 4.2 0.0 1.0 CG A:LYS36 4.2 0.0 1.0 CA A:MET45 4.3 0.0 1.0 CZ2 A:TRP33 4.4 0.0 1.0 OD1 A:ASP93 4.4 0.0 1.0 CA A:THR23 4.6 0.0 1.0 CG2 A:THR46 4.7 0.0 1.0 OG1 A:THR34 4.7 0.0 1.0 CH2 A:TRP33 4.8 0.0 1.0 N A:THR23 4.8 0.0 1.0 O1B A:GNP502 4.9 0.0 1.0 C A:THR46 5.0 0.0 1.0

E.Schmitt, M.Panvert, C.Lazennec-Schurdevin, P.D.Coureux, J.Perez, A.Thompson, Y.Mechulam. Structure of the Ternary Initiation Complex AIF2-Gdpnp-Methionylated Initiator Trna. Nat.Struct.Mol.Biol. V. 19 450 2012.
ISSN: ISSN 1545-9993
PubMed: 22447243
DOI: 10.1038/NSMB.2259