Magnesium in PDB 3v70: Crystal Structure of Human Gtpase Imap Family Member 1

The structure of Crystal Structure of Human Gtpase Imap Family Member 1, PDB code: 3v70 was solved by L.Nedyalkova, Y.Shen, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, D.W.Andrews, H.Park, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.82 / 2.21
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	81.348, 81.348, 178.934, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 24.6

The binding sites of Magnesium atom in the Crystal Structure of Human Gtpase Imap Family Member 1 (pdb code 3v70). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Gtpase Imap Family Member 1, PDB code: 3v70:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Gtpase Imap Family Member 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Gtpase Imap Family Member 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:30.4 occ:1.00 O A:HOH3 2.0 23.0 1.0 O3B A:GDP401 2.0 24.1 1.0 O A:HOH1 2.1 25.1 1.0 O A:HOH2 2.1 18.7 1.0 OG A:SER41 2.2 24.1 1.0 PB A:GDP401 3.1 25.8 1.0 CB A:SER41 3.2 24.8 1.0 O1B A:GDP401 3.3 26.9 1.0 N A:SER41 3.9 23.4 1.0 OD2 A:ASP82 4.0 28.1 1.0 O1A A:GDP401 4.1 29.9 1.0 CA A:SER41 4.2 23.2 1.0 O3A A:GDP401 4.2 27.3 1.0 O2B A:GDP401 4.3 24.6 1.0 OD1 A:ASP82 4.4 24.9 1.0 PA A:GDP401 4.5 29.9 1.0 O A:HOH256 4.5 30.4 1.0 O A:THR83 4.6 25.7 1.0 O2A A:GDP401 4.6 28.4 1.0 CG A:ASP82 4.7 25.3 1.0 CB A:LYS40 4.8 23.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Gtpase Imap Family Member 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Gtpase Imap Family Member 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:31.6 occ:1.00 O B:HOH4 2.0 25.4 1.0 O B:HOH6 2.0 30.3 1.0 O B:HOH5 2.1 29.1 1.0 O3B B:GDP401 2.1 31.9 1.0 OG B:SER41 2.3 32.5 1.0 PB B:GDP401 3.1 33.0 1.0 O1B B:GDP401 3.2 33.5 1.0 CB B:SER41 3.3 33.0 1.0 N B:SER41 4.0 31.8 1.0 OD2 B:ASP82 4.0 27.2 1.0 O B:HOH267 4.1 37.0 1.0 O B:HOH265 4.2 32.9 1.0 CA B:SER41 4.2 31.9 1.0 O2B B:GDP401 4.2 32.0 1.0 O3A B:GDP401 4.3 36.6 1.0 O1A B:GDP401 4.3 38.6 1.0 OD1 B:ASP82 4.4 26.9 1.0 O B:THR83 4.4 29.6 1.0 PA B:GDP401 4.6 38.0 1.0 CG B:ASP82 4.7 26.5 1.0 O B:HOH258 4.7 31.4 1.0 O2A B:GDP401 4.7 36.3 1.0 CB B:LYS40 4.8 29.6 1.0 O B:HOH266 5.0 35.6 1.0 CE B:LYS40 5.0 30.0 1.0

L.Nedyalkova, Y.Shen, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, D.W.Andrews, H.Park. Crystal Structure of Human Gtpase Imap Family Member 1 To Be Published.