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Magnesium in PDB 3v9x: Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Protein crystallography data
The structure of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site, PDB code: 3v9x
was solved by
Y.-Y.Hsiao,
H.S.Yuan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 23.27 / 1.90 |
| Space group | P 32 |
| Cell size a, b, c (Å), α, β, γ (°) | 46.280, 46.280, 314.379, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 18.5 / 22.3 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
(pdb code 3v9x). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site, PDB code: 3v9x:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site, PDB code: 3v9x:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 1 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 2 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 3 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 4 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 5 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 6 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 7 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 3v9x
Go back to
Magnesium Binding Sites List in 3v9x
Magnesium binding site 8 out
of 8 in the Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Rnase T in Complex with A Preferred Ssdna (Aaa) with Two Mg in the Active Site within 5.0Å range:
|
Reference:
Y.-Y.Hsiao,
Y.Duh,
Y.P.Chen,
Y.T.Wang,
H.S.Yuan.
How An Exonuclease Decides Where to Stop in Trimming of Nucleic Acids: Crystal Structures of Rnase T-Product Complexes Nucleic Acids Res. V. 40 8144 2012.
ISSN: ISSN 0305-1048
PubMed: 22718982
DOI: 10.1093/NAR/GKS548
Page generated: Thu Aug 15 12:49:31 2024
ISSN: ISSN 0305-1048
PubMed: 22718982
DOI: 10.1093/NAR/GKS548
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