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Magnesium in PDB 3vc6: Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate

Protein crystallography data

The structure of Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate, PDB code: 3vc6 was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.64
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.115, 78.115, 166.039, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate (pdb code 3vc6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate, PDB code: 3vc6:

Magnesium binding site 1 out of 1 in 3vc6

Go back to Magnesium Binding Sites List in 3vc6
Magnesium binding site 1 out of 1 in the Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase TBIS_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed with Magnesium and Formate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:24.9
occ:1.00
OE2 A:GLU242 1.9 25.1 1.0
OD1 A:ASN265 2.0 23.0 1.0
O A:HOH625 2.1 23.1 1.0
OD2 A:ASP217 2.1 25.1 1.0
O1 A:FMT503 2.2 25.3 1.0
O2 A:FMT503 2.2 24.1 1.0
C A:FMT503 2.6 27.3 1.0
CD A:GLU242 3.0 31.4 1.0
CG A:ASN265 3.0 21.7 1.0
CG A:ASP217 3.0 25.1 1.0
ND2 A:ASN265 3.4 20.9 1.0
OD1 A:ASP217 3.5 25.6 1.0
NZ A:LYS187 3.6 27.8 1.0
CG A:GLU242 3.6 24.6 1.0
OE1 A:GLU242 4.1 29.5 1.0
NZ A:LYS189 4.1 28.4 1.0
ND2 A:ASN219 4.1 23.9 1.0
OD2 A:ASP243 4.2 23.4 1.0
CB A:ASP217 4.3 22.8 1.0
CB A:ASN265 4.4 21.0 1.0
CE A:LYS187 4.4 26.6 1.0
CD2 A:LEU287 4.5 26.6 1.0
CD2 A:HIS316 4.5 24.1 1.0
OH A:TYR145 4.7 31.1 1.0
O A:HOH610 4.8 28.4 1.0
CG A:ASN219 4.8 28.4 1.0
CB A:GLU242 4.8 23.6 1.0
OD1 A:ASN219 4.8 24.6 1.0
N A:ASN265 4.9 20.4 1.0

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase TBIS_1083 From Thermobispora Bispora Dsm 43833 To Be Published.
Page generated: Mon Dec 14 08:58:30 2020

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