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Magnesium in PDB 3vcz: 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6

Protein crystallography data

The structure of 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6, PDB code: 3vcz was solved by A.S.Halavaty, G.Minasov, E.V.Filippova, I.Dubrovska, J.Winsor, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.13 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.877, 86.580, 68.162, 90.00, 90.67, 90.00
R / Rfree (%) 15.5 / 18.3

Other elements in 3vcz:

The structure of 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6 also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6 (pdb code 3vcz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6, PDB code: 3vcz:

Magnesium binding site 1 out of 1 in 3vcz

Go back to Magnesium Binding Sites List in 3vcz
Magnesium binding site 1 out of 1 in the 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:19.7
occ:1.00
OD1 B:ASN82 1.9 35.8 0.5
OD2 B:ASP80 2.0 25.0 0.5
O B:HOH378 2.1 28.7 1.0
OD1 B:ASP80 2.1 30.1 0.5
CB B:ASN82 2.6 29.1 0.5
ND2 B:ASN82 2.6 29.4 0.5
CG B:ASN82 2.7 34.9 0.5
CG B:ASP80 2.9 25.9 0.5
CG B:ASP80 2.9 28.5 0.5
CB B:ASN82 3.0 33.5 0.5
CG B:ASN82 3.0 29.4 0.5
OD2 B:ASP80 3.0 25.4 0.5
OD1 B:ASP80 3.1 26.2 0.5
CA B:ASN82 3.9 27.8 0.5
ND2 B:ASN82 4.0 37.0 0.5
OD1 B:ASN82 4.3 31.3 0.5
CB B:ASP80 4.3 24.4 0.5
CB B:ASP80 4.3 26.9 0.5
N B:ASN82 4.3 26.2 0.5
CA B:ASN82 4.4 32.5 0.5
C B:ASN82 4.5 29.0 0.5
OD1 B:ASP83 4.6 40.5 0.9
C B:ASN82 4.7 32.7 0.5
N B:ASP83 4.7 35.7 0.1
O B:HOH394 4.8 27.1 0.5
O B:HOH387 4.8 35.8 1.0
N B:ASP83 4.8 33.1 0.9

Reference:

A.S.Halavaty, G.Minasov, E.V.Filippova, I.Dubrovska, J.Winsor, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.80 Angstrom Resolution Crystal Structure of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus CMCP6 To Be Published.
Page generated: Thu Aug 15 12:54:40 2024

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