Magnesium in PDB 3viu: Crystal Structure of Purl From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of Purl From Thermus Thermophilus:
6.3.5.3;

The structure of Crystal Structure of Purl From Thermus Thermophilus, PDB code: 3viu was solved by S.Suzuki, H.Yanai, M.Kanagawa, S.Tamura, Y.Watanabe, K.Fuse, S.Baba, G.Sampei, G.Kawai, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.28 / 2.35
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	94.899, 94.563, 158.780, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 26

The binding sites of Magnesium atom in the Crystal Structure of Purl From Thermus Thermophilus (pdb code 3viu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Purl From Thermus Thermophilus, PDB code: 3viu:

Magnesium binding site 1 out of 1 in the Crystal Structure of Purl From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Purl From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg910 b:10.7 occ:1.00 O A:HOH1020 2.5 13.6 1.0 OD1 A:ASP620 2.5 21.4 1.0 O A:HOH1019 2.5 29.9 1.0 OD1 A:ASP430 2.6 26.5 1.0 OD1 A:ASN472 2.6 17.2 1.0 O A:HOH952 2.7 29.0 1.0 CG A:ASP620 3.5 20.2 1.0 CG A:ASN472 3.6 18.2 1.0 CG A:ASP430 3.6 23.2 1.0 OD2 A:ASP620 3.9 19.1 1.0 ND2 A:ASN472 4.0 18.3 1.0 CB A:ASP430 4.1 23.6 1.0 NE2 A:HIS619 4.5 11.7 1.0 CD2 A:HIS619 4.6 10.3 1.0 O A:ASP620 4.6 15.5 1.0 OD2 A:ASP430 4.6 22.4 1.0 CB A:ASP620 4.9 18.6 1.0 CA A:ASP430 4.9 23.6 1.0 O A:ASP430 4.9 21.5 1.0 CB A:ASN472 4.9 17.4 1.0 OE1 A:GLU468 4.9 30.9 1.0 N A:ASP620 4.9 15.8 1.0

S.Suzuki, H.Yanai, M.Kanagawa, S.Tamura, Y.Watanabe, K.Fuse, S.Baba, G.Sampei, G.Kawai. Structure of N-Formylglycinamide Ribonucleotide Amidotransferase II (Purl) From Thermus Thermophilus HB8 Acta Crystallogr.,Sect.F V. 68 14 2012.
ISSN: ESSN 1744-3091
PubMed: 22232163
DOI: 10.1107/S1744309111048184