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Magnesium in PDB 3vn9: Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State

Enzymatic activity of Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State

All present enzymatic activity of Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State:
2.7.12.2;

Protein crystallography data

The structure of Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State, PDB code: 3vn9 was solved by T.Kinoshita, H.Matsuzaka, R.Nakai, Y.Kirii, K.Yokota, T.Tada, T.Matsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.60
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.456, 83.456, 101.153, 90.00, 90.00, 120.00
R / Rfree (%) 26.4 / 28

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State (pdb code 3vn9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State, PDB code: 3vn9:

Magnesium binding site 1 out of 1 in 3vn9

Go back to Magnesium Binding Sites List in 3vn9
Magnesium binding site 1 out of 1 in the Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rifined Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:98.1
occ:1.00
 O1A A:ANK401 1.7 95.8 1.0
ND2 A:ASN184 1.9 90.1 1.0
OD2 A:ASP197 2.0 78.3 1.0
O2B A:ANK401 2.5 87.0 1.0
O1G A:ANK401 2.9 92.8 1.0
PA A:ANK401 3.0 77.2 1.0
CG A:ASN184 3.2 82.2 1.0
CG A:ASP197 3.2 80.1 1.0
PB A:ANK401 3.5 81.2 1.0
O3A A:ANK401 3.5 74.2 1.0
SG A:CYS196 3.8 0.4 1.0
OD1 A:ASP197 3.8 85.9 1.0
OD1 A:ASN184 4.0 96.9 1.0
O2A A:ANK401 4.0 99.3 1.0
NZ A:LYS82 4.1 90.2 1.0
CB A:ASN184 4.1 63.4 1.0
O5' A:ANK401 4.1 82.0 1.0
PG A:ANK401 4.2 0.3 1.0
CA A:ASN184 4.2 72.3 1.0
N3B A:ANK401 4.3 77.3 1.0
O A:SER183 4.4 65.2 1.0
CB A:ASP197 4.4 77.8 1.0
C8 A:ANK401 4.6 91.6 1.0
N A:ASN184 4.6 67.8 1.0
C A:SER183 4.6 75.6 1.0
C4' A:ANK401 4.6 84.7 1.0
O1B A:ANK401 4.8 89.2 1.0
C5' A:ANK401 4.8 85.8 1.0
CD A:LYS82 4.8 81.9 1.0
CE A:LYS82 4.8 90.1 1.0
O2G A:ANK401 4.9 99.0 1.0

Reference:

T.Matsumoto, T.Kinoshita, H.Matsuzaka, R.Nakai, Y.Kirii, K.Yokota, T.Tada. Crystal Structure of Non-Phosphorylated MAP2K6 in A Putative Auto-Inhibition State J.Biochem. V. 151 541 2012.
ISSN: ISSN 0021-924X
PubMed: 22383536
DOI: 10.1093/JB/MVS023
Page generated: Mon Dec 14 08:59:29 2020

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