Magnesium in PDB 3w2y: Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S

All present enzymatic activity of Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S:
3.1.11.2;

The structure of Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S, PDB code: 3w2y was solved by N.Tabata, T.Shida, R.Arai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	100.295, 100.295, 144.698, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 19.2

The binding sites of Magnesium atom in the Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S (pdb code 3w2y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S, PDB code: 3w2y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:31.1 occ:1.00 O A:HOH590 1.9 5.2 1.0 O A:HOH468 2.0 10.1 1.0 O A:HOH411 2.0 2.0 1.0 OD1 A:ASN12 2.0 13.8 1.0 O A:HOH509 2.1 4.3 1.0 OE2 A:GLU38 2.1 15.8 1.0 CD A:GLU38 2.9 16.7 1.0 OE1 A:GLU38 3.0 19.6 1.0 CG A:ASN12 3.1 13.5 1.0 CB A:ASN12 3.8 12.0 1.0 CA A:ASN12 4.0 11.4 1.0 O A:HOH452 4.0 4.5 1.0 NZ A:LYS40 4.0 26.2 1.0 OD1 A:ASP247 4.0 13.5 1.0 ND2 A:ASN12 4.1 14.7 1.0 OD2 A:ASP247 4.1 15.8 1.0 OD1 A:ASN10 4.3 9.6 1.0 CG A:GLU38 4.4 14.0 1.0 CG A:ASP247 4.5 14.4 1.0 CE A:LYS40 4.6 24.0 1.0 CB A:GLU38 4.8 13.5 1.0 ND2 A:ASN10 4.8 10.2 1.0 N A:ASN12 4.8 10.1 1.0 CG A:ASN10 5.0 9.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dna Uridine Endonuclease MTH212 Mutant W205S within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:28.0 occ:1.00 O D:HOH407 1.9 4.1 1.0 O D:HOH430 2.0 2.0 1.0 O D:HOH425 2.0 4.3 1.0 OD1 D:ASN12 2.1 19.1 1.0 O D:HOH449 2.1 9.4 1.0 OE2 D:GLU38 2.2 18.7 1.0 CD D:GLU38 3.1 17.9 1.0 CG D:ASN12 3.1 18.3 1.0 OE1 D:GLU38 3.4 18.7 1.0 CB D:ASN12 4.0 17.0 1.0 ND2 D:ASN12 4.0 18.2 1.0 OD2 D:ASP247 4.1 29.4 1.0 OD1 D:ASP247 4.1 24.2 1.0 O D:HOH465 4.1 6.2 1.0 O D:HOH455 4.1 8.3 1.0 OD1 D:ASN10 4.1 18.8 1.0 CA D:ASN12 4.2 17.3 1.0 OH D:TYR111 4.3 21.7 1.0 O D:HOH472 4.4 13.1 1.0 ND2 D:ASN10 4.4 18.9 1.0 CG D:GLU38 4.5 17.7 1.0 CG D:ASP247 4.5 26.5 1.0 O D:HOH515 4.5 16.6 1.0 O D:HOH464 4.6 23.4 1.0 CG D:ASN10 4.7 18.3 1.0 CB D:GLU38 4.9 18.2 1.0

N.Tabata, T.Shida, R.Arai. Crystal Structure of Dna Uridine Endonuclease MTH212 To Be Published.