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Magnesium in PDB 3wnw: Structure of Mouse H-Chain Modified Ferritin

Enzymatic activity of Structure of Mouse H-Chain Modified Ferritin

All present enzymatic activity of Structure of Mouse H-Chain Modified Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Structure of Mouse H-Chain Modified Ferritin, PDB code: 3wnw was solved by R.Zarivach, L.Lewin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.86 / 2.24
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 218.145, 218.145, 147.690, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26.5

Other elements in 3wnw:

The structure of Structure of Mouse H-Chain Modified Ferritin also contains other interesting chemical elements:

Potassium (K) 2 atoms
Iron (Fe) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Magnesium atom in the Structure of Mouse H-Chain Modified Ferritin (pdb code 3wnw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 20 binding sites of Magnesium where determined in the Structure of Mouse H-Chain Modified Ferritin, PDB code: 3wnw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 20 in 3wnw

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Magnesium binding site 1 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:28.1
occ:1.00
 O A:HOH382 1.9 20.3 1.0
O A:HOH383 1.9 26.2 1.0
OE2 A:GLU27 2.1 14.4 1.0
OE2 A:GLU62 2.2 13.5 1.0
ND1 A:HIS65 2.2 24.6 1.0
CE1 A:HIS65 3.0 24.2 1.0
CD A:GLU27 3.1 13.4 1.0
CD A:GLU62 3.2 15.6 1.0
OE1 A:GLN141 3.2 28.2 1.0
CG A:HIS65 3.3 22.3 1.0
OE1 A:GLU27 3.4 13.3 1.0
OE1 A:GLU62 3.5 18.0 1.0
CB A:HIS65 3.8 17.2 1.0
NE2 A:HIS65 4.2 26.8 1.0
CG1 A:VAL110 4.2 14.3 1.0
CD2 A:HIS65 4.3 25.2 1.0
CD A:GLN141 4.4 24.8 1.0
CG A:GLU27 4.5 12.5 1.0
CG A:GLU62 4.5 14.4 1.0
CA A:GLU62 4.8 13.7 1.0
CB A:GLU27 4.9 11.4 1.0
CB A:GLU62 5.0 13.9 1.0

Magnesium binding site 2 out of 20 in 3wnw

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Magnesium binding site 2 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:23.2
occ:1.00
 O A:HOH392 1.9 26.7 1.0
O B:HOH398 2.1 28.9 1.0
O B:HOH328 2.2 15.3 1.0
O A:HOH362 2.3 20.7 1.0
O C:HOH331 2.3 12.9 1.0
O A:HOH393 2.4 20.5 1.0
OE2 B:GLU134 3.8 19.1 1.0
O B:HOH393 3.8 29.9 1.0
O B:HOH329 3.8 15.4 1.0
O B:HOH325 3.9 13.9 1.0
O B:HOH304 4.0 10.9 1.0
O C:HOH313 4.0 19.1 1.0
OE1 B:GLU134 4.1 22.5 1.0
OE2 C:GLU134 4.1 20.1 1.0
OE2 A:GLU134 4.1 19.2 1.0
O A:HOH302 4.2 23.8 1.0
O A:HOH371 4.3 21.5 1.0
CD B:GLU134 4.4 19.8 1.0
OE1 A:GLU134 4.4 22.1 1.0
OE1 C:GLU134 4.6 25.3 1.0
CD A:GLU134 4.7 19.2 1.0
CD C:GLU134 4.7 22.0 1.0

Magnesium binding site 3 out of 20 in 3wnw

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Magnesium binding site 3 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:25.3
occ:1.00
 OE2 B:GLU62 1.9 28.1 1.0
OE2 B:GLU27 1.9 19.6 1.0
O B:HOH414 2.0 34.6 1.0
O B:HOH383 2.1 22.3 1.0
ND1 B:HIS65 2.3 29.6 1.0
CD B:GLU62 2.9 23.3 1.0
CD B:GLU27 3.0 17.3 1.0
CE1 B:HIS65 3.1 32.7 1.0
OE1 B:GLU62 3.3 28.1 1.0
CG B:HIS65 3.4 24.1 1.0
OE1 B:GLU27 3.4 19.7 1.0
CB B:HIS65 3.7 19.6 1.0
O B:HOH402 3.8 29.2 1.0
OE1 B:GLN141 4.0 21.5 1.0
CG B:GLU62 4.2 20.8 1.0
NE2 B:HIS65 4.3 32.0 1.0
CG B:GLU27 4.3 14.8 1.0
CD2 B:HIS65 4.4 28.0 1.0
CG1 B:VAL110 4.5 13.2 1.0
CA B:GLU62 4.5 17.0 1.0
CB B:GLU62 4.5 18.0 1.0
CB B:GLU27 4.6 14.1 1.0
CA B:GLU27 4.9 12.6 1.0
O B:GLU62 4.9 14.2 1.0

Magnesium binding site 4 out of 20 in 3wnw

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Magnesium binding site 4 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg201

b:26.6
occ:1.00
 O B:HOH397 2.3 15.9 1.0
OD2 C:ASP131 2.4 15.2 1.0
O A:HOH421 2.4 28.2 1.0
O A:HOH405 2.4 21.4 1.0
O B:HOH409 2.5 24.6 1.0
O B:HOH329 2.5 15.4 1.0
OE1 A:GLU134 2.8 22.1 1.0
CG C:ASP131 3.3 14.5 1.0
OE1 C:GLU134 3.5 25.3 1.0
OD1 A:ASP131 3.6 16.8 1.0
O B:HOH326 3.6 14.7 1.0
CB C:ASP131 3.7 13.1 1.0
CB A:GLU134 3.8 17.4 1.0
CD A:GLU134 3.9 19.2 1.0
CA C:ASP131 4.1 11.8 1.0
OE1 B:GLU134 4.2 22.5 1.0
OD1 B:ASP131 4.4 14.9 1.0
O C:HOH365 4.4 24.2 1.0
CG A:GLU134 4.4 17.2 1.0
OD1 C:ASP131 4.5 15.2 1.0
O A:HOH392 4.6 26.7 1.0
OG1 A:THR135 4.6 15.7 1.0
CD C:GLU134 4.6 22.0 1.0
CG A:ASP131 4.7 14.9 1.0
OG1 C:THR135 4.8 17.0 1.0
OE2 A:GLU134 4.8 19.2 1.0
O C:ASP131 4.9 11.8 1.0
CA A:ASP131 5.0 12.1 1.0

Magnesium binding site 5 out of 20 in 3wnw

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Magnesium binding site 5 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg202

b:23.4
occ:1.00
 O C:HOH348 2.0 13.5 1.0
ND1 C:HIS65 2.2 33.6 1.0
OE2 C:GLU27 2.2 12.5 1.0
O C:HOH341 2.2 20.5 1.0
OE2 C:GLU62 2.3 16.6 1.0
CE1 C:HIS65 3.0 32.2 1.0
CD C:GLU27 3.1 11.5 1.0
CG C:HIS65 3.2 27.9 1.0
CD C:GLU62 3.3 16.4 1.0
OE1 C:GLU27 3.4 10.1 1.0
O C:HOH392 3.5 33.3 1.0
OE1 C:GLN141 3.6 20.4 1.0
CB C:HIS65 3.6 20.6 1.0
OE1 C:GLU62 3.7 19.5 1.0
O C:HOH403 3.8 35.3 1.0
NE2 C:HIS65 4.2 33.1 1.0
CD2 C:HIS65 4.3 29.4 1.0
CG1 C:VAL110 4.3 15.4 1.0
CG C:GLU27 4.5 11.0 1.0
CA C:GLU62 4.6 13.7 1.0
CG C:GLU62 4.6 14.8 1.0
CD C:GLN141 4.7 17.0 1.0
O C:HOH402 4.9 36.9 1.0
CD2 C:TYR137 4.9 15.4 1.0
CB C:GLU62 4.9 13.7 1.0
CB C:GLU27 4.9 10.1 1.0
OE1 C:GLU107 4.9 25.8 1.0

Magnesium binding site 6 out of 20 in 3wnw

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Magnesium binding site 6 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg201

b:24.6
occ:1.00
 O D:HOH381 1.9 19.3 1.0
OE2 D:GLU62 2.0 21.6 1.0
O D:HOH380 2.1 24.6 1.0
ND1 D:HIS65 2.1 20.7 1.0
OE2 D:GLU27 2.1 12.6 1.0
CE1 D:HIS65 2.9 22.1 1.0
CD D:GLU62 2.9 19.9 1.0
CD D:GLU27 3.2 12.1 1.0
OE1 D:GLU62 3.2 20.8 1.0
CG D:HIS65 3.2 19.5 1.0
OE1 D:GLU27 3.5 13.0 1.0
O D:HOH382 3.6 27.8 1.0
CB D:HIS65 3.7 17.0 1.0
OE1 D:GLN141 3.8 21.5 1.0
NE2 D:HIS65 4.1 22.3 1.0
CG D:GLU62 4.3 17.9 1.0
CD2 D:HIS65 4.3 21.2 1.0
CG1 D:VAL110 4.5 13.7 1.0
CG D:GLU27 4.5 11.2 1.0
CA D:GLU62 4.5 14.9 1.0
CB D:GLU62 4.6 16.3 1.0
CD D:GLN141 4.8 16.9 1.0
CB D:GLU27 4.8 10.6 1.0

Magnesium binding site 7 out of 20 in 3wnw

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Magnesium binding site 7 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg202

b:21.0
occ:1.00
 O E:HOH361 2.1 17.9 1.0
O D:HOH366 2.1 14.3 1.0
O D:HOH390 2.1 22.8 1.0
O D:HOH405 2.2 25.7 1.0
O D:HOH365 2.2 29.6 1.0
O F:HOH391 2.4 26.8 1.0
O D:HOH430 2.8 34.1 1.0
OE2 D:GLU134 3.8 15.6 1.0
OE2 F:GLU134 3.9 18.6 1.0
OE2 E:GLU134 3.9 20.8 1.0
OE1 D:GLU134 4.0 21.2 1.0
O D:HOH301 4.0 24.0 1.0
OE1 E:GLU134 4.1 24.4 1.0
CD D:GLU134 4.3 17.5 1.0
O E:HOH331 4.4 14.2 1.0
OE1 F:GLU134 4.4 25.9 1.0
O F:HOH331 4.4 13.4 1.0
CD E:GLU134 4.4 20.2 1.0
O D:HOH392 4.5 23.8 1.0
CD F:GLU134 4.5 19.5 1.0
O D:HOH406 4.5 30.1 1.0

Magnesium binding site 8 out of 20 in 3wnw

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Magnesium binding site 8 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg201

b:38.9
occ:1.00
 O D:HOH391 1.9 21.3 1.0
O F:HOH302 2.2 15.5 1.0
O E:HOH412 2.3 27.1 1.0
OD1 E:ASP131 2.6 17.4 1.0
O D:HOH430 2.7 34.1 1.0
OE1 F:GLU134 3.0 25.9 1.0
OE1 E:GLU134 3.1 24.4 1.0
OD1 D:ASP131 3.2 19.3 1.0
OE1 D:GLU134 3.7 21.2 1.0
OD1 F:ASP131 3.7 18.9 1.0
CG E:ASP131 3.8 15.7 1.0
CD F:GLU134 4.3 19.5 1.0
CD E:GLU134 4.3 20.2 1.0
CG D:ASP131 4.4 16.9 1.0
CB E:ASP131 4.5 14.0 1.0
CB E:GLU134 4.6 17.5 1.0
O D:HOH366 4.7 14.3 1.0
CA E:ASP131 4.7 13.8 1.0
O D:HOH365 4.7 29.6 1.0
O E:HOH361 4.7 17.9 1.0
CB F:GLU134 4.7 15.2 1.0
CD D:GLU134 4.7 17.5 1.0
CB D:ASP131 4.8 14.6 1.0
CG F:ASP131 4.8 17.1 1.0
OD2 E:ASP131 4.8 15.7 1.0
OG1 E:THR135 4.9 17.4 1.0
O E:HOH370 4.9 23.6 1.0

Magnesium binding site 9 out of 20 in 3wnw

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Magnesium binding site 9 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg202

b:28.1
occ:1.00
 O E:HOH372 1.9 32.9 1.0
O E:HOH373 2.0 26.4 1.0
ND1 E:HIS65 2.2 25.9 1.0
OE2 E:GLU27 2.2 14.2 1.0
OE2 E:GLU62 2.3 24.6 1.0
CE1 E:HIS65 2.8 28.6 1.0
CD E:GLU62 3.2 23.0 1.0
CD E:GLU27 3.2 13.9 1.0
OE1 E:GLU62 3.4 30.2 1.0
OE1 E:GLN141 3.4 18.5 1.0
CG E:HIS65 3.5 22.8 1.0
OE1 E:GLU27 3.5 14.1 1.0
O E:HOH411 3.6 36.1 1.0
NE2 E:HIS65 4.0 28.0 1.0
CB E:HIS65 4.1 18.4 1.0
CG1 E:VAL110 4.2 16.4 1.0
CD2 E:HIS65 4.4 24.9 1.0
CD E:GLN141 4.4 17.1 1.0
CG E:GLU62 4.6 19.5 1.0
CG E:GLU27 4.7 13.1 1.0
O E:HOH319 4.7 29.6 1.0
OE1 E:GLU107 4.8 29.2 1.0
CA E:GLU62 4.8 16.1 1.0
CB E:GLU62 5.0 17.5 1.0

Magnesium binding site 10 out of 20 in 3wnw

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Magnesium binding site 10 out of 20 in the Structure of Mouse H-Chain Modified Ferritin


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Mouse H-Chain Modified Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg201

b:24.1
occ:1.00
 OE2 F:GLU62 1.8 19.5 1.0
O F:HOH392 2.0 25.5 1.0
O F:HOH393 2.0 27.3 1.0
ND1 F:HIS65 2.1 27.3 1.0
OE2 F:GLU27 2.2 16.6 1.0
CD F:GLU62 2.8 20.0 1.0
CE1 F:HIS65 2.9 29.5 1.0
CG F:HIS65 3.1 23.6 1.0
OE1 F:GLU62 3.2 21.1 1.0
CD F:GLU27 3.3 13.7 1.0
CB F:HIS65 3.5 18.8 1.0
OE1 F:GLU27 3.6 14.6 1.0
O F:HOH399 3.9 36.4 1.0
OE1 F:GLN141 4.0 35.0 1.0
NE2 F:HIS65 4.1 28.5 1.0
CD2 F:HIS65 4.2 27.0 1.0
CG F:GLU62 4.2 16.9 1.0
CG1 F:VAL110 4.4 9.5 1.0
CA F:GLU62 4.4 15.1 1.0
CG F:GLU27 4.6 12.9 1.0
CB F:GLU62 4.6 15.2 1.0
OE1 F:GLU140 4.8 40.8 1.0
CD F:GLN141 4.8 24.3 1.0
CB F:GLU27 4.9 11.3 1.0

Reference:

R.Zarivach, L.Lewin. Studies of Ferritin-M6A To Be Published.
Page generated: Mon Dec 14 09:01:21 2020

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