Magnesium in PDB 3wow: Crystal Structure of Human CK2A with Amppnp

All present enzymatic activity of Crystal Structure of Human CK2A with Amppnp:
2.7.11.1;

The structure of Crystal Structure of Human CK2A with Amppnp, PDB code: 3wow was solved by T.Kinoshita, T.Nakaniwa, Y.Sekiguchi, Y.Sogabe, A.Sakurai, S.Nakamura, I.Nakanishi, K.Shimada, M.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.82 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.242, 78.460, 82.389, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 24

The binding sites of Magnesium atom in the Crystal Structure of Human CK2A with Amppnp (pdb code 3wow). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human CK2A with Amppnp, PDB code: 3wow:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human CK2A with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human CK2A with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:51.9 occ:1.00 O2A A:ANP403 1.8 83.8 1.0 OD1 A:ASN161 2.2 22.2 1.0 N3B A:ANP403 2.7 82.3 1.0 O1G A:ANP403 3.0 77.4 1.0 O A:HOH566 3.0 36.8 1.0 CG A:ASN161 3.2 22.1 1.0 PA A:ANP403 3.3 84.2 1.0 CB A:ASP175 3.4 27.6 1.0 PG A:ANP403 3.5 80.1 1.0 ND2 A:ASN161 3.5 23.6 1.0 CG A:ASP175 3.9 31.2 1.0 O3A A:ANP403 3.9 83.6 1.0 PB A:ANP403 4.0 84.1 1.0 OD2 A:ASP175 4.1 35.1 1.0 O A:HOH578 4.2 15.3 1.0 O5' A:ANP403 4.2 81.5 1.0 O1A A:ANP403 4.2 84.4 1.0 O2G A:ANP403 4.3 77.9 1.0 CE A:LYS158 4.4 24.1 1.0 C5' A:ANP403 4.5 77.5 1.0 CB A:ASN161 4.5 22.4 1.0 NZ A:LYS158 4.7 24.7 1.0 OD1 A:ASP175 4.7 31.4 1.0 OD2 A:ASP156 4.7 22.1 1.0 O2B A:ANP403 4.7 82.3 1.0 O3G A:ANP403 4.8 80.1 1.0 CA A:ASP175 4.8 26.9 1.0 CA A:ASN161 4.9 23.5 1.0 O A:HOH549 4.9 28.8 1.0 MG A:MG402 4.9 47.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human CK2A with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human CK2A with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:47.8 occ:1.00 OD2 A:ASP175 2.6 35.1 1.0 O3G A:ANP403 2.8 80.1 1.0 N3B A:ANP403 3.1 82.3 1.0 OD1 A:ASP175 3.2 31.4 1.0 CG A:ASP175 3.2 31.2 1.0 O2B A:ANP403 3.2 82.3 1.0 O A:HOH575 3.3 40.0 1.0 O A:HOH598 3.5 32.0 1.0 PG A:ANP403 3.5 80.1 1.0 PB A:ANP403 3.7 84.1 1.0 O A:HOH593 4.0 33.1 1.0 O1G A:ANP403 4.1 77.4 1.0 OD2 A:ASP156 4.2 22.1 1.0 O1B A:ANP403 4.4 84.8 1.0 CG A:LEU178 4.5 22.7 1.0 CB A:ASP175 4.6 27.6 1.0 CA A:GLY177 4.8 23.3 1.0 C A:GLY177 4.9 22.8 1.0 N A:LEU178 4.9 23.0 1.0 O2G A:ANP403 4.9 77.9 1.0 MG A:MG401 4.9 51.9 1.0 CD2 A:LEU178 5.0 21.5 1.0 NZ A:LYS68 5.0 38.1 1.0

T.Kinoshita, T.Nakaniwa, Y.Sekiguchi, Y.Sogabe, A.Sakurai, S.Nakamura, I.Nakanishi, K.Shimada, M.Tanaka. A Hydrophobic Residue Divergence of CK2A Contribute to A Species-Dependent Variation For Apigenin Binding Mode But Not For An Atp Analogue To Be Published.