Magnesium in PDB 3wt0: Crystal Structure Analysis of Cell Division Protein

The structure of Crystal Structure Analysis of Cell Division Protein, PDB code: 3wt0 was solved by K.Kato, T.Ishido, T.Matsui, M.Yao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.54 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	106.032, 70.628, 120.676, 90.00, 108.00, 90.00
R / Rfree (%)	20.8 / 23.6

The binding sites of Magnesium atom in the Crystal Structure Analysis of Cell Division Protein (pdb code 3wt0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure Analysis of Cell Division Protein, PDB code: 3wt0:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure Analysis of Cell Division Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Analysis of Cell Division Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:35.0 occ:1.00 O1B A:ATP400 2.0 38.8 1.0 O A:HOH633 2.0 38.7 1.0 O A:HOH603 2.0 35.0 1.0 O1G A:ATP400 2.0 37.5 1.0 O A:HOH601 2.1 32.1 1.0 O A:HOH602 2.2 29.6 1.0 PB A:ATP400 3.3 37.6 1.0 PG A:ATP400 3.4 33.9 1.0 O3B A:ATP400 3.7 34.4 1.0 O3A A:ATP400 3.9 34.3 1.0 O A:HOH514 3.9 47.6 1.0 O A:HOH605 3.9 40.1 1.0 O2A A:ATP400 4.0 34.3 1.0 O A:HOH517 4.0 33.0 1.0 NZ A:LYS77 4.1 34.2 1.0 O2G A:ATP400 4.1 35.6 1.0 OD2 A:ASP10 4.2 39.9 1.0 OD1 A:ASP10 4.4 42.9 1.0 NZ A:LYS17 4.5 41.4 1.0 OD2 A:ASP206 4.5 52.5 1.0 O3G A:ATP400 4.5 32.2 1.0 PA A:ATP400 4.5 35.2 1.0 O2B A:ATP400 4.5 34.2 1.0 OD1 A:ASP206 4.6 46.7 1.0 O A:HOH567 4.7 37.6 1.0 CG A:ASP10 4.7 39.9 1.0 CA A:GLY208 4.8 26.7 1.0 CG A:ASP206 4.9 47.8 1.0 CA A:GLY12 4.9 34.9 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure Analysis of Cell Division Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure Analysis of Cell Division Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:35.0 occ:1.00 O3G B:ATP400 1.9 43.7 1.0 O1B B:ATP400 1.9 35.2 1.0 O B:HOH595 1.9 28.8 1.0 O B:HOH638 2.0 29.8 1.0 O B:HOH504 2.1 26.5 1.0 O B:HOH503 2.2 26.2 1.0 PB B:ATP400 3.2 24.8 1.0 PG B:ATP400 3.2 32.2 1.0 O3B B:ATP400 3.5 32.7 1.0 O3A B:ATP400 3.8 30.1 1.0 O1G B:ATP400 4.0 35.0 1.0 O B:HOH517 4.0 23.5 1.0 O2A B:ATP400 4.0 36.4 1.0 O B:HOH505 4.0 27.0 1.0 O B:HOH502 4.0 26.5 1.0 NZ B:LYS77 4.1 25.3 1.0 OD2 B:ASP10 4.2 39.9 1.0 O2G B:ATP400 4.3 40.6 1.0 O2B B:ATP400 4.4 28.8 1.0 OD1 B:ASP10 4.4 35.8 1.0 PA B:ATP400 4.5 28.1 1.0 O B:HOH634 4.5 28.9 1.0 NZ B:LYS17 4.6 35.9 1.0 OD1 B:ASP206 4.6 43.1 1.0 OD2 B:ASP206 4.6 39.5 1.0 CA B:GLY208 4.8 27.2 1.0 CG B:ASP10 4.8 36.4 1.0 CA B:GLY12 4.9 22.7 1.0 CG B:ASP206 4.9 40.2 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure Analysis of Cell Division Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure Analysis of Cell Division Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:35.8 occ:1.00 O1B C:ATP400 1.9 26.0 1.0 O2G C:ATP400 2.0 42.2 1.0 O C:HOH711 2.0 30.5 1.0 O C:HOH503 2.0 26.4 1.0 O C:HOH527 2.1 28.9 1.0 O C:HOH504 2.3 32.3 1.0 PB C:ATP400 3.2 28.8 1.0 PG C:ATP400 3.3 27.5 1.0 O3B C:ATP400 3.6 33.7 1.0 O C:HOH714 3.7 50.7 1.0 O C:HOH528 3.7 37.0 1.0 O3A C:ATP400 3.8 31.2 1.0 O C:HOH613 3.8 47.2 1.0 OD2 C:ASP206 3.9 63.0 1.0 O C:HOH532 3.9 28.6 1.0 O2A C:ATP400 4.0 38.4 1.0 NZ C:LYS77 4.0 28.2 1.0 O3G C:ATP400 4.1 33.6 1.0 OD2 C:ASP10 4.3 42.7 1.0 OD1 C:ASP10 4.4 39.2 1.0 O1G C:ATP400 4.4 35.2 1.0 O2B C:ATP400 4.5 26.3 1.0 PA C:ATP400 4.5 29.7 1.0 NZ C:LYS17 4.5 42.9 1.0 CG C:ASP10 4.8 40.0 1.0 CA C:GLY208 4.8 24.0 1.0 CA C:GLY12 4.8 28.8 1.0 CG C:ASP206 4.9 58.1 1.0 O C:HOH514 4.9 38.7 1.0 CE C:LYS77 5.0 29.3 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure Analysis of Cell Division Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure Analysis of Cell Division Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:33.6 occ:1.00 O1B D:ATP400 1.9 29.1 1.0 O1G D:ATP400 2.0 37.9 1.0 O D:HOH506 2.0 25.5 1.0 O D:HOH710 2.1 24.6 1.0 O D:HOH523 2.2 29.8 1.0 O D:HOH507 2.2 27.3 1.0 PB D:ATP400 3.2 30.0 1.0 PG D:ATP400 3.3 25.8 1.0 O D:HOH541 3.4 38.8 1.0 O3B D:ATP400 3.6 32.2 1.0 O D:HOH553 3.8 43.8 1.0 O D:HOH720 3.9 37.3 1.0 O3A D:ATP400 3.9 27.3 1.0 O D:HOH502 3.9 21.0 1.0 NZ D:LYS77 4.0 26.1 1.0 OD2 D:ASP206 4.0 57.8 1.0 O2G D:ATP400 4.0 29.2 1.0 O2A D:ATP400 4.0 57.1 1.0 OD2 D:ASP10 4.2 35.5 1.0 OD1 D:ASP10 4.3 40.4 1.0 O3G D:ATP400 4.4 32.8 1.0 O2B D:ATP400 4.5 26.8 1.0 NZ D:LYS17 4.5 36.4 1.0 PA D:ATP400 4.6 25.5 1.0 OD1 D:ASP206 4.6 46.8 1.0 CG D:ASP206 4.7 46.2 1.0 CG D:ASP10 4.7 34.7 1.0 CA D:GLY208 4.8 26.2 1.0 CA D:GLY12 4.8 28.1 1.0 CE D:LYS77 4.9 27.1 1.0

K.Kato, T.Ishido, T.Matsui, M.Yao. Crystal Structure Analysis of Cell Division Protein To Be Published.