Atomistry » Magnesium » PDB 3x1l-3zi4 » 3zda
Atomistry »
  Magnesium »
    PDB 3x1l-3zi4 »
      3zda »

Magnesium in PDB 3zda: Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium

Protein crystallography data

The structure of Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium, PDB code: 3zda was solved by G.R.Hemsworth, C.S.Anstey-Gilbert, C.S.Flemming, M.R.G.Hodskinson, J.Zhang, S.E.Sedelnikova, T.J.Stillman, J.R.Sayers, P.J.Artymiuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.64 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.203, 154.820, 34.473, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 23.5

Other elements in 3zda:

The structure of Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium also contains other interesting chemical elements:

Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium (pdb code 3zda). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium, PDB code: 3zda:

Magnesium binding site 1 out of 1 in 3zda

Go back to Magnesium Binding Sites List in 3zda
Magnesium binding site 1 out of 1 in the Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of E. Coli Exoix in Complex with A Fragment of the FLAP1 Dna Oligonucleotide, Potassium and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1252

b:36.8
occ:1.00
O A:HOH2017 2.0 29.4 1.0
O A:HOH2240 2.0 35.1 1.0
OD1 A:ASP104 2.1 26.1 1.0
O A:HOH2098 2.3 49.9 1.0
O A:HOH2019 2.4 38.9 1.0
O A:HOH2077 2.4 51.8 1.0
CG A:ASP104 2.8 23.6 1.0
OD2 A:ASP104 2.9 27.0 1.0
O A:HOH2016 3.5 34.6 1.0
O A:HOH2076 4.1 41.1 1.0
OE1 A:GLU102 4.1 56.5 1.0
O A:HOH2022 4.3 33.7 1.0
OD2 A:ASP9 4.3 26.1 1.0
NZ A:LYS67 4.3 38.6 1.0
CB A:ASP104 4.3 21.9 1.0
OD2 A:ASP127 4.4 35.8 1.0
N A:ASP104 4.6 20.1 1.0
OD1 A:ASP9 4.8 21.5 1.0
CD A:GLU102 4.8 37.2 1.0
CB A:GLU102 4.9 36.0 1.0
OD2 A:ASP50 4.9 27.8 1.0
CG A:ASP9 4.9 21.6 1.0
CA A:ASP104 5.0 18.1 1.0
O A:HOH2148 5.0 50.7 1.0

Reference:

C.S.Anstey-Gilbert, G.R.Hemsworth, C.S.Flemming, M.R.G.Hodskinson, J.Zhang, S.E.Sedelnikova, T.J.Stillman, J.R.Sayers, P.J.Artymiuk. The Structure of E. Coli Exoix - Implications For Dna Binding and Catalysis in Flap Endonucleases Nucleic Acids Res. V. 41 8357 2013.
ISSN: ISSN 0305-1048
PubMed: 23821668
DOI: 10.1093/NAR/GKT591
Page generated: Mon Dec 14 09:02:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy