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Magnesium in PDB 3zf4: Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp)., PDB code: 3zf4 was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.85 / 3.10
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 87.470, 87.470, 87.470, 90.00, 90.00, 90.00
R / Rfree (%) 24.025 / 29.059

Other elements in 3zf4:

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp). also contains other interesting chemical elements:

Nickel (Ni) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp). (pdb code 3zf4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp)., PDB code: 3zf4:

Magnesium binding site 1 out of 1 in 3zf4

Go back to Magnesium Binding Sites List in 3zf4
Magnesium binding site 1 out of 1 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase Y81A Mutant with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg888

b:84.8
occ:1.00
O2A A:DUP777 2.0 98.6 1.0
O2B A:DUP777 2.1 0.4 1.0
O2G A:DUP777 3.1 99.0 1.0
PB A:DUP777 3.5 0.9 1.0
PA A:DUP777 3.5 98.6 1.0
N3A A:DUP777 3.9 99.5 1.0
PG A:DUP777 3.9 0.6 1.0
O3G A:DUP777 4.0 0.1 1.0
O3B A:DUP777 4.1 1.0 1.0
O1A A:DUP777 4.3 99.8 1.0
O5' A:DUP777 4.5 98.2 1.0
O1B A:DUP777 4.6 0.9 1.0
OD2 A:ASP81 4.9 0.3 1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013
Page generated: Mon Dec 14 09:03:07 2020

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