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Magnesium in PDB 3zhu: Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
Enzymatic activity of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
All present enzymatic activity of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate:
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
Protein crystallography data
The structure of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate, PDB code: 3zhu
was solved by
T.Wagner,
N.Barilone,
M.Bellinzoni,
P.M.Alzari,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.36 / 2.30 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 79.783, 82.286, 163.039, 99.19, 99.10, 100.71 |
| R / Rfree (%) | 19.99 / 23.49 |
Other elements in 3zhu:
The structure of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate also contains other interesting chemical elements:
| Calcium | (Ca) | 4 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
(pdb code 3zhu). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate, PDB code: 3zhu:
Jump to Magnesium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate, PDB code: 3zhu:
Jump to Magnesium binding site number: 1; 2; 3; 4;
Magnesium binding site 1 out of 4 in 3zhu
Go back to
Magnesium Binding Sites List in 3zhu
Magnesium binding site 1 out
of 4 in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate within 5.0Å range:
|
Magnesium binding site 2 out of 4 in 3zhu
Go back to
Magnesium Binding Sites List in 3zhu
Magnesium binding site 2 out
of 4 in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate within 5.0Å range:
|
Magnesium binding site 3 out of 4 in 3zhu
Go back to
Magnesium Binding Sites List in 3zhu
Magnesium binding site 3 out
of 4 in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate within 5.0Å range:
|
Magnesium binding site 4 out of 4 in 3zhu
Go back to
Magnesium Binding Sites List in 3zhu
Magnesium binding site 4 out
of 4 in the Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the Suca Domain of Mycobacterium Smegmatis Kgd, Second Post-Decarboxylation Intermediate From 2-Oxoadipate within 5.0Å range:
|
Reference:
T.Wagner,
N.Barilone,
P.M.Alzari,
M.Bellinzoni.
A Dual Conformation of the Post-Decarboxylation Intermediate Is Associated with Distinct Enzyme States in Mycobacterial Alpha-Ketoglutarate Decarboxylase (Kgd). Biochem.J. V. 457 425 2014.
ISSN: ISSN 0264-6021
PubMed: 24171907
DOI: 10.1042/BJ20131142
Page generated: Thu Aug 15 13:55:18 2024
ISSN: ISSN 0264-6021
PubMed: 24171907
DOI: 10.1042/BJ20131142
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