Magnesium in PDB 3zjy: Crystal Structure of Importin 13 - Rangtp - EIF1A Complex

The structure of Crystal Structure of Importin 13 - Rangtp - EIF1A Complex, PDB code: 3zjy was solved by M.Gruenwald, D.Lazzaretti, F.Bono, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.549 / 3.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	186.500, 100.400, 274.720, 90.00, 90.91, 90.00
R / Rfree (%)	25.63 / 28.79

The binding sites of Magnesium atom in the Crystal Structure of Importin 13 - Rangtp - EIF1A Complex (pdb code 3zjy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Importin 13 - Rangtp - EIF1A Complex, PDB code: 3zjy:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Importin 13 - Rangtp - EIF1A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Importin 13 - Rangtp - EIF1A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1178 b:52.3 occ:1.00 OG1 A:THR42 2.0 64.1 1.0 OG1 A:THR24 2.0 55.3 1.0 O1B A:GTP250 2.1 1.0 1.0 O1G A:GTP250 2.7 0.1 1.0 CB A:THR24 2.8 55.1 1.0 CB A:THR42 3.0 64.1 1.0 PB A:GTP250 3.1 0.2 1.0 OD2 A:ASP65 3.2 79.7 1.0 O2B A:GTP250 3.2 0.4 1.0 PG A:GTP250 3.5 0.1 1.0 O3G A:GTP250 3.6 0.1 1.0 O3B A:GTP250 3.8 0.3 1.0 CG2 A:THR42 3.8 64.3 1.0 CA A:THR24 3.8 55.2 1.0 CG2 A:THR24 3.8 55.1 1.0 CG A:ASP65 3.9 79.7 1.0 N A:THR24 4.0 55.1 1.0 OD1 A:ASP65 4.1 79.7 1.0 CA A:THR42 4.2 64.0 1.0 N A:THR42 4.3 63.8 1.0 O3A A:GTP250 4.5 0.3 1.0 O2A A:GTP250 4.5 0.8 1.0 CG A:LYS23 4.6 55.1 1.0 O A:VAL40 4.6 62.2 1.0 O A:THR66 4.8 56.7 1.0 O2G A:GTP250 4.9 0.8 1.0 PA A:GTP250 4.9 0.3 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Importin 13 - Rangtp - EIF1A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Importin 13 - Rangtp - EIF1A Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1178 b:90.5 occ:1.00 OG1 D:THR24 2.1 0.8 1.0 O1B D:GTP250 2.1 0.6 1.0 OG1 D:THR42 2.3 0.8 1.0 O1G D:GTP250 2.3 0.7 1.0 PB D:GTP250 2.8 0.8 1.0 O3G D:GTP250 2.8 0.7 1.0 O2B D:GTP250 2.9 0.9 1.0 PG D:GTP250 2.9 0.7 1.0 CB D:THR24 3.2 0.9 1.0 O3B D:GTP250 3.2 0.8 1.0 CB D:THR42 3.3 0.7 1.0 OD2 D:ASP65 3.4 85.7 1.0 CG2 D:THR42 4.1 0.7 1.0 N D:THR24 4.1 0.7 1.0 CA D:THR24 4.2 0.8 1.0 CG2 D:THR24 4.2 1.0 1.0 O2G D:GTP250 4.3 0.4 1.0 CG D:ASP65 4.3 85.1 1.0 O3A D:GTP250 4.3 0.9 1.0 CA D:THR42 4.5 0.8 1.0 OD1 D:ASP65 4.5 84.7 1.0 N D:THR42 4.6 0.8 1.0 O D:THR66 4.6 69.1 1.0 O2A D:GTP250 4.7 0.4 1.0 O D:VAL40 4.7 77.0 1.0 CE D:LYS23 4.8 86.8 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Importin 13 - Rangtp - EIF1A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Importin 13 - Rangtp - EIF1A Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1178 b:59.4 occ:1.00 OG1 F:THR24 1.5 52.5 1.0 O1B F:GTP250 2.1 94.6 1.0 OG1 F:THR42 2.1 69.7 1.0 CB F:THR24 2.8 52.4 1.0 O1G F:GTP250 2.8 95.8 1.0 OD1 F:ASP65 2.9 78.8 1.0 CB F:THR42 3.1 69.6 1.0 PB F:GTP250 3.2 96.8 1.0 CG2 F:THR24 3.2 52.4 1.0 O2B F:GTP250 3.3 95.0 1.0 PG F:GTP250 3.6 94.8 1.0 O3G F:GTP250 3.6 94.7 1.0 N F:THR24 3.9 52.4 1.0 CA F:THR24 3.9 52.4 1.0 CG F:ASP65 3.9 78.8 1.0 O3B F:GTP250 3.9 94.9 1.0 CG2 F:THR42 4.0 69.4 1.0 N F:THR42 4.3 69.9 1.0 OD2 F:ASP65 4.3 78.8 1.0 CA F:THR42 4.3 69.7 1.0 O2A F:GTP250 4.5 0.5 1.0 O3A F:GTP250 4.6 97.0 1.0 O F:VAL40 4.6 83.2 1.0 PA F:GTP250 4.9 1.0 1.0

M.Grunwald, D.Lazzaretti, F.Bono. Structural Basis For the Nuclear Export Activity of IMPORTIN13. Embo J. V. 32 899 2013.
ISSN: ISSN 0261-4189
PubMed: 23435562
DOI: 10.1038/EMBOJ.2013.29