Magnesium in PDB 3zoz: The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion.

All present enzymatic activity of The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion.:
2.7.2.3;

The structure of The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion., PDB code: 3zoz was solved by M.W.Bowler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.980, 91.810, 108.210, 90.00, 90.00, 90.00
R / Rfree (%)	16.142 / 20.878

The structure of The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion. also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Bromine	(Br)	1 atom

The binding sites of Magnesium atom in the The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion. (pdb code 3zoz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion., PDB code: 3zoz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1418 b:8.0 occ:1.00 O3B A:ADP1422 2.0 7.6 1.0 F1 A:MGF1420 2.0 9.2 1.0 O A:HOH2241 2.0 5.9 1.0 OD2 A:ASP375 2.1 8.2 1.0 O2A A:ADP1422 2.1 7.2 1.0 O A:HOH2400 2.1 8.4 1.0 PB A:ADP1422 3.1 7.2 1.0 CG A:ASP375 3.2 9.1 1.0 PA A:ADP1422 3.2 7.3 1.0 MG A:MGF1420 3.5 11.0 1.0 O3A A:ADP1422 3.5 7.8 1.0 O2B A:ADP1422 3.7 7.3 1.0 O A:HOH2427 3.8 9.0 1.0 CB A:ASP375 3.8 8.8 1.0 NZ A:LYS216 3.9 7.5 1.0 N A:ASP375 4.0 8.5 1.0 O A:HOH2398 4.1 16.1 1.0 CE A:LYS216 4.1 8.0 1.0 O2 A:3PG1421 4.1 8.1 1.0 OD1 A:ASP375 4.2 8.6 1.0 O A:HOH2023 4.2 25.4 1.0 C5' A:ADP1422 4.2 8.0 1.0 O5' A:ADP1422 4.3 7.8 1.0 O A:HOH2047 4.4 12.3 1.0 O1A A:ADP1422 4.4 8.1 1.0 O1B A:ADP1422 4.5 7.3 1.0 O A:HOH2399 4.5 19.5 1.0 F2 A:MGF1420 4.5 10.4 1.0 CA A:ASP375 4.6 8.9 1.0 CD A:LYS216 4.7 8.1 1.0 O1 A:3PG1421 4.7 7.8 1.0 N A:GLY374 4.8 8.2 1.0 C1 A:3PG1421 4.8 7.9 1.0 C A:GLY374 4.9 8.4 1.0 CA A:GLY374 4.9 8.2 1.0

Magnesium binding site 2 out of 2 in the The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Human Phosphoglycerate Kinase with Bound Bromide, A Stimulating Anion. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1420 b:11.0 occ:1.00 MG A:MGF1420 0.0 11.0 1.0 F1 A:MGF1420 1.9 9.2 1.0 F2 A:MGF1420 2.0 10.4 1.0 F3 A:MGF1420 2.0 11.0 1.0 O2B A:ADP1422 2.1 7.3 1.0 O1 A:3PG1421 2.2 7.8 1.0 C1 A:3PG1421 3.0 7.9 1.0 PB A:ADP1422 3.1 7.2 1.0 O3B A:ADP1422 3.2 7.6 1.0 O2 A:3PG1421 3.2 8.1 1.0 MG A:MG1418 3.5 8.0 1.0 O A:HOH2400 3.7 8.4 1.0 O A:HOH2194 3.9 9.6 1.0 NZ A:LYS220 3.9 8.5 1.0 NZ A:LYS216 3.9 7.5 1.0 O A:HOH2197 4.0 6.8 1.0 CA A:GLY396 4.1 7.9 1.0 N A:GLY374 4.1 8.2 1.0 O2A A:ADP1422 4.2 7.2 1.0 O3A A:ADP1422 4.2 7.8 1.0 O1B A:ADP1422 4.2 7.3 1.0 NH2 A:ARG39 4.2 8.4 1.0 N A:GLY397 4.2 8.3 1.0 C2 A:3PG1421 4.4 8.2 1.0 N A:GLY396 4.5 8.2 1.0 CA A:GLY373 4.5 8.2 1.0 PA A:ADP1422 4.5 7.3 1.0 OD1 A:ASN337 4.7 8.4 1.0 CD A:LYS216 4.7 8.1 1.0 C A:GLY396 4.7 8.1 1.0 CE A:LYS216 4.7 8.0 1.0 O1A A:ADP1422 4.7 8.1 1.0 O A:HOH2241 4.8 5.9 1.0 CE A:LYS220 4.8 8.5 1.0 C A:GLY373 4.8 8.3 1.0

M.W.Bowler, M.W.Bowler. N/A N/A.