Magnesium in PDB 3zq0: Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein

The binding sites of Magnesium atom in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein (pdb code 3zq0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein, PDB code: 3zq0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg550 b:0.0 occ:1.00 O2A A:ADP1 2.3 0.0 1.0 OD1 A:ASP87 2.5 0.0 1.0 O1B A:ADP1 2.7 0.0 1.0 OD2 A:ASP87 2.9 0.0 1.0 CG A:ASP87 3.0 0.0 1.0 O A:SER151 3.1 0.0 1.0 O3B A:ADP1 3.3 0.0 1.0 PB A:ADP1 3.4 0.0 1.0 PA A:ADP1 3.5 0.0 1.0 OG A:SER151 3.6 0.0 1.0 CA A:SER151 3.7 0.0 1.0 O3A A:ADP1 3.8 0.0 1.0 C A:SER151 3.8 0.0 1.0 CB A:SER151 4.2 0.0 1.0 O1A A:ADP1 4.3 0.0 1.0 CB A:ASP87 4.5 0.0 1.0 O5' A:ADP1 4.7 0.0 1.0 N A:GLY88 4.8 0.0 1.0 CB A:ASP398 4.8 0.0 1.0 O A:ILE150 4.9 0.0 1.0 N A:SER151 4.9 0.0 1.0

Magnesium binding site 2 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg550 b:0.0 occ:1.00 O2A B:ADP1 2.4 0.0 1.0 O1B B:ADP1 2.7 0.0 1.0 OD1 B:ASP87 2.8 0.0 1.0 O B:SER151 2.9 0.0 1.0 OD2 B:ASP87 3.0 0.0 1.0 CG B:ASP87 3.3 0.0 1.0 OG B:SER151 3.4 0.0 1.0 CA B:SER151 3.4 0.0 1.0 C B:SER151 3.6 0.0 1.0 PA B:ADP1 3.7 0.0 1.0 PB B:ADP1 3.8 0.0 1.0 O3B B:ADP1 3.9 0.0 1.0 CB B:SER151 3.9 0.0 1.0 O3A B:ADP1 4.0 0.0 1.0 O1A B:ADP1 4.6 0.0 1.0 O5' B:ADP1 4.6 0.0 1.0 O B:ILE150 4.6 0.0 1.0 N B:SER151 4.7 0.0 1.0 CB B:ASP87 4.8 0.0 1.0 CB B:ASP398 4.8 0.0 1.0 N B:ALA152 4.9 0.0 1.0

Magnesium binding site 3 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg550 b:0.0 occ:1.00 O2A C:ADP1 2.5 0.0 1.0 OD1 C:ASP87 2.6 0.0 1.0 O1B C:ADP1 2.7 0.0 1.0 O3B C:ADP1 3.0 0.0 1.0 PB C:ADP1 3.3 0.0 1.0 O C:SER151 3.5 0.0 1.0 CG C:ASP87 3.5 0.0 1.0 PA C:ADP1 3.6 0.0 1.0 O3A C:ADP1 3.7 0.0 1.0 OD2 C:ASP87 3.7 0.0 1.0 OG C:SER151 3.9 0.0 1.0 O1A C:ADP1 4.2 0.0 1.0 OD2 C:ASP398 4.2 0.0 1.0 CB C:ASP398 4.3 0.0 1.0 C C:SER151 4.3 0.0 1.0 CA C:SER151 4.4 0.0 1.0 CG C:ASP398 4.5 0.0 1.0 CB C:SER151 4.7 0.0 1.0 N C:GLY88 4.8 0.0 1.0 O5' C:ADP1 4.8 0.0 1.0 O2B C:ADP1 4.9 0.0 1.0 CB C:ASP87 4.9 0.0 1.0

Magnesium binding site 4 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg550 b:0.0 occ:1.00 O2A D:ADP1 2.4 0.0 1.0 O D:SER151 2.6 0.0 1.0 OD1 D:ASP87 2.8 0.0 1.0 OD2 D:ASP87 3.0 0.0 1.0 OG D:SER151 3.0 0.0 1.0 CA D:SER151 3.2 0.0 1.0 CG D:ASP87 3.2 0.0 1.0 C D:SER151 3.3 0.0 1.0 O1B D:ADP1 3.4 0.0 1.0 CB D:SER151 3.6 0.0 1.0 PA D:ADP1 3.8 0.0 1.0 O3B D:ADP1 4.1 0.0 1.0 PB D:ADP1 4.3 0.0 1.0 O1A D:ADP1 4.3 0.0 1.0 O3A D:ADP1 4.4 0.0 1.0 CB D:ASP398 4.4 0.0 1.0 N D:SER151 4.5 0.0 1.0 N D:ALA152 4.6 0.0 1.0 O D:ILE150 4.6 0.0 1.0 CB D:ASP87 4.7 0.0 1.0 O5' D:ADP1 4.8 0.0 1.0 OD2 D:ASP398 4.9 0.0 1.0

Magnesium binding site 5 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg550 b:0.0 occ:1.00 O2A E:ADP1 2.5 0.0 1.0 OD1 E:ASP87 2.6 0.0 1.0 O1B E:ADP1 2.7 0.0 1.0 O E:SER151 2.8 0.0 1.0 O3B E:ADP1 3.1 0.0 1.0 PB E:ADP1 3.3 0.0 1.0 CG E:ASP87 3.4 0.0 1.0 OG E:SER151 3.5 0.0 1.0 OD2 E:ASP87 3.5 0.0 1.0 PA E:ADP1 3.6 0.0 1.0 C E:SER151 3.7 0.0 1.0 CA E:SER151 3.7 0.0 1.0 O3A E:ADP1 3.8 0.0 1.0 CB E:SER151 4.2 0.0 1.0 O1A E:ADP1 4.3 0.0 1.0 CB E:ASP398 4.6 0.0 1.0 OD2 E:ASP398 4.7 0.0 1.0 O5' E:ADP1 4.8 0.0 1.0 N E:GLY88 4.8 0.0 1.0 CB E:ASP87 4.8 0.0 1.0 O2B E:ADP1 4.9 0.0 1.0 N E:ALA152 4.9 0.0 1.0 O E:ILE150 5.0 0.0 1.0 CG E:ASP398 5.0 0.0 1.0

Magnesium binding site 6 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg550 b:0.0 occ:1.00 O2A F:ADP1 2.6 0.0 1.0 O3B F:ADP1 2.6 0.0 1.0 OD1 F:ASP87 2.7 0.0 1.0 O1B F:ADP1 3.2 0.0 1.0 PB F:ADP1 3.4 0.0 1.0 PA F:ADP1 3.5 0.0 1.0 CG F:ASP87 3.5 0.0 1.0 O3A F:ADP1 3.6 0.0 1.0 O F:SER151 3.6 0.0 1.0 OD2 F:ASP87 3.8 0.0 1.0 O1A F:ADP1 3.8 0.0 1.0 OG F:SER151 4.1 0.0 1.0 OD2 F:ASP398 4.3 0.0 1.0 CB F:ASP398 4.4 0.0 1.0 C F:SER151 4.5 0.0 1.0 CA F:SER151 4.6 0.0 1.0 CG F:ASP398 4.6 0.0 1.0 N F:GLY88 4.7 0.0 1.0 CB F:ASP87 4.7 0.0 1.0 O5' F:ADP1 4.9 0.0 1.0 CA F:ASP87 4.9 0.0 1.0 O2B F:ADP1 4.9 0.0 1.0 CB F:SER151 5.0 0.0 1.0

Magnesium binding site 7 out of 7 in the Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Visualizing Groel-Es in the Act of Encapsulating A Non-Native Substrate Protein within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg550 b:0.0 occ:1.00 O2A G:ADP1 2.4 0.0 1.0 OD1 G:ASP87 2.5 0.0 1.0 O1B G:ADP1 2.9 0.0 1.0 O G:SER151 3.0 0.0 1.0 OD2 G:ASP87 3.1 0.0 1.0 O3B G:ADP1 3.1 0.0 1.0 CG G:ASP87 3.2 0.0 1.0 PB G:ADP1 3.5 0.0 1.0 PA G:ADP1 3.6 0.0 1.0 OG G:SER151 3.7 0.0 1.0 CA G:SER151 3.8 0.0 1.0 C G:SER151 3.8 0.0 1.0 O3A G:ADP1 3.8 0.0 1.0 CB G:SER151 4.3 0.0 1.0 O1A G:ADP1 4.3 0.0 1.0 CB G:ASP87 4.6 0.0 1.0 CB G:ASP398 4.7 0.0 1.0 O5' G:ADP1 4.8 0.0 1.0 O G:ILE150 4.9 0.0 1.0 OD2 G:ASP398 4.9 0.0 1.0 N G:GLY88 4.9 0.0 1.0 N G:SER151 5.0 0.0 1.0

D.-H.Chen, D.Madan, J.Weaver, Z.Lin, G.F.Schroder, W.Chiu, H.S.Rye. Visualizing Groel/Es in the Act of Encapsulating A Folding Protein Cell(Cambridge,Mass.) V. 153 1354 2013.
ISSN: ISSN 0092-8674
PubMed: 23746846
DOI: 10.1016/J.CELL.2013.04.052