Magnesium in PDB 3zth: Crystal Structure of STU0660 of Streptococcus Thermophilus

The structure of Crystal Structure of STU0660 of Streptococcus Thermophilus, PDB code: 3zth was solved by K.-H.Lee, H.Robinson, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.0 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.149, 101.869, 102.784, 90.00, 115.14, 90.00
R / Rfree (%)	20.46 / 24.31

The binding sites of Magnesium atom in the Crystal Structure of STU0660 of Streptococcus Thermophilus (pdb code 3zth). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of STU0660 of Streptococcus Thermophilus, PDB code: 3zth:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of STU0660 of Streptococcus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of STU0660 of Streptococcus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1349 b:38.6 occ:1.00 O A:HOH2027 2.4 75.2 1.0 OD2 A:ASP240 2.4 44.6 1.0 O A:HOH2021 2.5 29.8 1.0 O A:HOH2019 2.5 43.7 1.0 O A:HOH2026 2.6 55.6 1.0 OE1 A:GLN26 2.7 38.3 1.0 CG A:ASP240 3.4 40.8 1.0 CD A:GLN26 3.5 35.4 1.0 OD1 A:ASP240 3.8 37.6 1.0 NE2 A:GLN26 3.8 32.6 1.0 O A:HOH2020 3.9 43.8 1.0 ND2 A:ASN28 4.1 36.8 1.0 OE2 B:GLU212 4.2 39.7 1.0 OH B:TYR243 4.2 33.4 1.0 OD1 A:ASN28 4.3 38.0 1.0 CE2 B:TYR243 4.5 33.5 1.0 O A:HOH2107 4.5 42.3 1.0 CG A:ASN28 4.6 36.1 1.0 CA A:GLN26 4.6 28.9 1.0 CB A:ASP240 4.7 38.8 1.0 CG A:GLN26 4.8 31.8 1.0 CZ B:TYR243 4.8 34.1 1.0 O A:GLN26 4.9 29.5 1.0 CB A:GLN26 4.9 29.6 1.0 O A:GLY25 4.9 23.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of STU0660 of Streptococcus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of STU0660 of Streptococcus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1349 b:35.5 occ:1.00 O B:HOH2019 2.4 33.8 1.0 O A:HOH2096 2.4 39.4 1.0 OE1 B:GLN26 2.5 34.9 1.0 O B:HOH2079 2.5 48.1 1.0 OD2 B:ASP240 2.8 39.7 1.0 O A:HOH2092 3.1 33.0 1.0 CD B:GLN26 3.5 32.9 1.0 OH A:TYR243 3.7 32.9 1.0 CG B:ASP240 3.9 38.9 1.0 OE2 A:GLU212 3.9 42.7 1.0 NE2 B:GLN26 4.0 30.5 1.0 OD1 B:ASN28 4.0 34.2 1.0 ND2 B:ASN28 4.0 35.8 1.0 CE1 A:TYR243 4.1 31.8 1.0 OD1 B:ASP240 4.2 37.4 1.0 CG B:ASN28 4.4 35.3 1.0 CZ A:TYR243 4.4 32.3 1.0 CA B:GLN26 4.6 28.8 1.0 CG B:GLN26 4.7 29.4 1.0 CG A:GLU212 4.7 41.4 1.0 O B:HOH2020 4.7 54.9 1.0 O B:GLN26 4.7 29.5 1.0 CD A:GLU212 4.8 42.5 1.0 CB B:GLN26 4.8 27.4 1.0 O A:HOH2108 4.9 37.6 1.0 NE2 A:GLN241 4.9 51.8 1.0

K.-H.Lee, S.-G.Lee, K.E.Lee, H.Jeon, H.Robinson, B.-H.Oh. Identification, Structural, and Biochemical Characterization of A Group of Large CSN2 Proteins Involved in Crispr-Mediated Bacterial Immunity. Proteins V. 80 2573 2012.
ISSN: ISSN 0887-3585
PubMed: 22753072
DOI: 10.1002/PROT.24138