Magnesium in PDB 3zvl: The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase

Enzymatic activity of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase

All present enzymatic activity of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase:
2.7.1.78; 3.1.3.32;

Protein crystallography data

The structure of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase, PDB code: 3zvl was solved by F.Garces, L.H.Pearl, A.W.Oliver, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	33.933 / 1.65
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	42.750, 63.500, 67.900, 90.00, 91.82, 90.00
*R / R_free (%)*	17.05 / 21.82

Other elements in 3zvl:

The structure of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase (pdb code 3zvl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase, PDB code: 3zvl:

Magnesium binding site 1 out of 1 in 3zvl

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Magnesium Binding Sites List in 3zvl

Magnesium binding site 1 out of 1 in the The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1524 b:9.8 occ:1.00	OD2	A:ASP170	2.1	9.2	1.0
	O	A:ASP172	2.1	8.9	1.0
	OD1	A:ASP288	2.2	10.3	1.0
	O	A:HOH2034	2.2	10.1	1.0
	O	A:HOH2033	2.2	9.8	1.0
	O	A:HOH2036	2.3	11.7	1.0
	CG	A:ASP170	3.1	8.8	1.0
	CG	A:ASP288	3.2	13.9	1.0
	C	A:ASP172	3.3	10.6	1.0
	OD2	A:ASP288	3.4	14.3	1.0
	OD1	A:ASP170	3.5	8.6	1.0
	OD2	A:ASP309	4.1	9.8	1.0
	CA	A:ASP172	4.1	12.8	1.0
	OG1	A:THR174	4.1	8.5	1.0
	N	A:ASP172	4.2	7.7	1.0
	O	A:HOH2097	4.2	23.4	1.0
	N	A:GLY173	4.3	8.4	1.0
	CB	A:ASP170	4.3	5.0	1.0
	CB	A:ASP172	4.3	13.6	1.0
	O	A:HOH2035	4.3	23.6	1.0
	O	A:HOH2032	4.3	7.3	1.0
	O	A:HOH2101	4.4	21.4	1.0
	CA	A:GLY173	4.4	9.1	1.0
	CB	A:ASP288	4.5	11.9	1.0
	C	A:GLY173	4.6	11.0	1.0
	N	A:ASP288	4.6	9.4	1.0
	O	A:HOH2205	4.6	31.9	1.0
	CL	A:CL1525	4.7	17.3	1.0
	N	A:ALA289	4.7	8.3	1.0
	N	A:THR174	4.7	8.7	1.0
	C	A:LEU171	4.9	9.0	1.0
	CA	A:ASP288	5.0	10.0	1.0

Reference:

F.Garces, L.H.Pearl, A.W.Oliver. The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase. Mol.Cell V. 44 385 2011.
ISSN: ISSN 1097-2765
PubMed: 22055185
DOI: 10.1016/J.MOLCEL.2011.08.036

Page generated: Thu Aug 15 14:06:23 2024

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