Magnesium in PDB 3zw7: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate., PDB code: 3zw7 was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	24.958 / 1.90
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	39.794, 70.804, 92.770, 90.00, 95.54, 90.00
*R / R_free (%)*	16.23 / 20.34

Other elements in 3zw7:

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. (pdb code 3zw7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate., PDB code: 3zw7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3zw7

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Magnesium Binding Sites List in 3zw7

Magnesium binding site 1 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg260 b:64.1 occ:1.00	OD2	A:ASP6	2.4	58.3	1.0
	O	A:ASP8	2.6	52.0	1.0
	O	A:HOH2009	2.7	49.1	0.7
	OD1	A:ASP202	2.8	54.0	1.0
	O	A:HOH2222	2.8	59.1	0.8
	CG	A:ASP6	3.2	60.5	1.0
	OD1	A:ASP6	3.2	51.7	1.0
	C	A:ASP8	3.6	55.5	1.0
	O	A:HOH2006	3.7	68.6	0.9
	CG	A:ASP202	3.7	63.1	1.0
	CB	A:ASP8	3.9	71.4	1.0
	O	A:HOH2008	3.9	50.0	0.8
	OD2	A:ASP202	4.0	62.4	1.0
	CA	A:ASP8	4.0	65.3	1.0
	N	A:ASP8	4.1	42.3	1.0
	CL	A:CL1254	4.2	57.8	1.0
	CB	A:ASP6	4.6	51.2	1.0
	N	A:GLY9	4.8	60.9	1.0
	OD2	A:ASP206	4.8	48.9	1.0
	C	A:LEU7	4.9	53.1	1.0

Magnesium binding site 2 out of 2 in 3zw7

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Magnesium Binding Sites List in 3zw7

Magnesium binding site 2 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg260 b:39.8 occ:1.00	O3	B:PO3261	2.2	61.5	0.7
	OD2	B:ASP6	2.6	64.5	1.0
	O	B:ASP8	2.7	47.5	1.0
	OG	B:SER203	2.7	52.9	1.0
	O	B:HOH2007	2.9	59.6	1.0
	OD1	B:ASP202	2.9	48.3	1.0
	CG	B:ASP6	3.2	54.1	1.0
	P	B:PO3261	3.4	53.7	0.7
	O	B:GLY165	3.4	49.8	1.0
	OD1	B:ASP6	3.4	50.4	1.0
	O1	B:PO3261	3.5	30.1	0.7
	C	B:ASP8	3.8	38.4	1.0
	CB	B:SER203	3.9	41.7	1.0
	CG	B:ASP202	4.0	68.5	1.0
	OD2	B:ASP206	4.1	40.4	1.0
	CB	B:ASP8	4.2	49.4	1.0
	O2	B:PO3261	4.3	32.5	0.7
	CA	B:ASP8	4.3	40.0	1.0
	OD2	B:ASP202	4.4	75.6	1.0
	CB	B:ASP6	4.4	39.6	1.0
	C23	B:2M8262	4.5	47.5	0.8
	N	B:ASP8	4.5	35.7	1.0
	OD1	B:ASN205	4.5	46.1	1.0
	C	B:GLY165	4.5	45.4	1.0
	N	B:SER203	4.7	44.0	1.0
	O13	B:2M8262	4.8	50.8	0.8
	N	B:GLY9	4.8	42.3	1.0
	CA	B:SER203	5.0	36.1	1.0
	ND2	B:ASN205	5.0	41.8	1.0
	OG1	B:THR10	5.0	53.4	1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H

Page generated: Thu Aug 15 14:06:54 2024

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