Magnesium in PDB 3zw7: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate., PDB code: 3zw7 was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.958 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.794, 70.804, 92.770, 90.00, 95.54, 90.00
R / Rfree (%) 16.23 / 20.34

Other elements in 3zw7:

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. (pdb code 3zw7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate., PDB code: 3zw7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3zw7

Go back to Magnesium Binding Sites List in 3zw7
Magnesium binding site 1 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg260

b:64.1
occ:1.00
OD2 A:ASP6 2.4 58.3 1.0
O A:ASP8 2.6 52.0 1.0
O A:HOH2009 2.7 49.1 0.7
OD1 A:ASP202 2.8 54.0 1.0
O A:HOH2222 2.8 59.1 0.8
CG A:ASP6 3.2 60.5 1.0
OD1 A:ASP6 3.2 51.7 1.0
C A:ASP8 3.6 55.5 1.0
O A:HOH2006 3.7 68.6 0.9
CG A:ASP202 3.7 63.1 1.0
CB A:ASP8 3.9 71.4 1.0
O A:HOH2008 3.9 50.0 0.8
OD2 A:ASP202 4.0 62.4 1.0
CA A:ASP8 4.0 65.3 1.0
N A:ASP8 4.1 42.3 1.0
CL A:CL1254 4.2 57.8 1.0
CB A:ASP6 4.6 51.2 1.0
N A:GLY9 4.8 60.9 1.0
OD2 A:ASP206 4.8 48.9 1.0
C A:LEU7 4.9 53.1 1.0

Magnesium binding site 2 out of 2 in 3zw7

Go back to Magnesium Binding Sites List in 3zw7
Magnesium binding site 2 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate and Metaphosphate. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg260

b:39.8
occ:1.00
O3 B:PO3261 2.2 61.5 0.7
OD2 B:ASP6 2.6 64.5 1.0
O B:ASP8 2.7 47.5 1.0
OG B:SER203 2.7 52.9 1.0
O B:HOH2007 2.9 59.6 1.0
OD1 B:ASP202 2.9 48.3 1.0
CG B:ASP6 3.2 54.1 1.0
P B:PO3261 3.4 53.7 0.7
O B:GLY165 3.4 49.8 1.0
OD1 B:ASP6 3.4 50.4 1.0
O1 B:PO3261 3.5 30.1 0.7
C B:ASP8 3.8 38.4 1.0
CB B:SER203 3.9 41.7 1.0
CG B:ASP202 4.0 68.5 1.0
OD2 B:ASP206 4.1 40.4 1.0
CB B:ASP8 4.2 49.4 1.0
O2 B:PO3261 4.3 32.5 0.7
CA B:ASP8 4.3 40.0 1.0
OD2 B:ASP202 4.4 75.6 1.0
CB B:ASP6 4.4 39.6 1.0
C23 B:2M8262 4.5 47.5 0.8
N B:ASP8 4.5 35.7 1.0
OD1 B:ASN205 4.5 46.1 1.0
C B:GLY165 4.5 45.4 1.0
N B:SER203 4.7 44.0 1.0
O13 B:2M8262 4.8 50.8 0.8
N B:GLY9 4.8 42.3 1.0
CA B:SER203 5.0 36.1 1.0
ND2 B:ASN205 5.0 41.8 1.0
OG1 B:THR10 5.0 53.4 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Mon Dec 14 09:04:47 2020

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