Atomistry » Magnesium » PDB 3zx4-4a28 » 3zx4
Atomistry »
  Magnesium »
    PDB 3zx4-4a28 »
      3zx4 »

Magnesium in PDB 3zx4: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium, PDB code: 3zx4 was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.533 / 1.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.900, 70.740, 92.300, 90.00, 95.36, 90.00
R / Rfree (%) 17.22 / 21.91

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium (pdb code 3zx4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium, PDB code: 3zx4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3zx4

Go back to Magnesium Binding Sites List in 3zx4
Magnesium binding site 1 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg260

b:56.8
occ:1.00
O3 A:PO4261 1.9 61.1 0.7
OD2 A:ASP6 2.5 73.6 1.0
O A:ASP8 2.6 61.2 1.0
O A:HOH2172 2.6 57.4 0.9
O A:HOH2005 2.6 46.8 1.0
OD1 A:ASP202 2.7 52.8 1.0
P A:PO4261 3.1 47.9 0.7
CG A:ASP6 3.3 64.4 1.0
O2 A:PO4261 3.3 26.6 0.7
OD1 A:ASP6 3.5 58.0 1.0
C A:ASP8 3.5 67.4 1.0
CG A:ASP202 3.7 65.1 1.0
CB A:ASP8 3.8 76.9 1.0
O1 A:PO4261 3.9 36.8 0.7
CA A:ASP8 3.9 69.3 1.0
O A:HOH2068 4.0 66.9 1.0
N A:ASP8 4.0 58.0 1.0
OD2 A:ASP202 4.0 80.0 1.0
O4 A:PO4261 4.3 56.0 0.7
N A:GLY9 4.6 66.4 1.0
O A:GLY165 4.6 69.2 1.0
CB A:ASP6 4.7 46.0 1.0
C A:LEU7 4.7 49.3 1.0
C23 A:2M8262 4.8 40.4 0.6
O13 A:2M8262 4.8 40.7 0.6
N A:LEU7 5.0 40.5 1.0

Magnesium binding site 2 out of 2 in 3zx4

Go back to Magnesium Binding Sites List in 3zx4
Magnesium binding site 2 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha- Mannosylglycerate,Orthophosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg260

b:26.6
occ:1.00
O2 B:PO4261 2.0 33.0 1.0
OD2 B:ASP6 2.1 29.1 1.0
O B:ASP8 2.1 25.3 1.0
O B:HOH2007 2.2 27.7 1.0
O B:HOH2010 2.2 27.5 1.0
OD1 B:ASP202 2.2 32.9 1.0
CG B:ASP6 3.0 33.7 1.0
CG B:ASP202 3.2 42.6 1.0
C B:ASP8 3.2 27.2 1.0
OD1 B:ASP6 3.3 42.2 1.0
P B:PO4261 3.4 28.9 1.0
OD2 B:ASP202 3.6 42.1 1.0
CB B:ASP8 3.9 34.1 1.0
CA B:ASP8 3.9 29.3 1.0
N B:ASP8 3.9 22.6 1.0
O3 B:PO4261 3.9 28.3 1.0
O4 B:PO4261 4.0 29.3 1.0
OD2 B:ASP206 4.1 32.2 1.0
OG1 B:THR10 4.3 29.7 1.0
O B:GLY165 4.3 49.3 1.0
CB B:ASP6 4.3 28.1 1.0
N B:GLY9 4.3 26.3 1.0
O B:HOH2004 4.4 47.1 0.9
O1 B:PO4261 4.4 30.8 1.0
OG B:SER203 4.4 39.8 1.0
O13 B:2M8262 4.6 43.3 1.0
CB B:ASP202 4.6 35.2 1.0
C B:LEU7 4.6 27.3 1.0
CA B:GLY9 4.6 33.1 1.0
CB B:SER203 4.7 32.2 1.0
N B:ASP202 4.8 29.1 1.0
N B:THR10 4.8 29.9 1.0
OD1 B:ASN205 4.8 34.2 1.0
N B:LEU7 4.8 24.0 1.0
C B:GLY9 4.9 34.9 1.0
N B:SER203 5.0 28.1 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Thu Aug 15 14:08:56 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy