Magnesium in PDB 471d: Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna

The structure of Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna, PDB code: 471d was solved by M.Teplova, G.Minasov, V.Tereshko, G.Inamati, P.D.Cook, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	44.060, 35.400, 48.340, 90.00, 95.00, 90.00
R / Rfree (%)	19.3 / 25.2

The binding sites of Magnesium atom in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna (pdb code 471d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna, PDB code: 471d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg100 b:23.1 occ:1.00 OP1 A:G482 4.1 23.0 1.0 OP2 A:C433 4.2 5.1 1.0 OP1 B:G4816 4.4 32.2 1.0 OP1 A:C433 4.7 12.1 1.0 OP2 B:G4816 4.8 31.1 1.0 P A:C433 4.8 12.2 1.0 OP1 B:C4315 4.9 16.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure and Improved Antisense Properties of 2'-O-(2- Methoxyethyl)-Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:27.2 occ:1.00 OP1 A:G484 3.9 22.9 1.0 OP1 B:C4315 4.5 16.4 1.0 OP2 A:G484 4.7 16.4 1.0 P A:G484 4.8 19.5 1.0 OP1 A:C433 4.9 12.1 1.0

M.Teplova, G.Minasov, V.Tereshko, G.B.Inamati, P.D.Cook, M.Manoharan, M.Egli. Crystal Structure and Improved Antisense Properties of 2'-O-(2-Methoxyethyl)-Rna. Nat.Struct.Biol. V. 6 535 1999.
ISSN: ISSN 1072-8368
PubMed: 10360355
DOI: 10.1038/9304