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Magnesium in PDB 4a6j: Structural Model of Parm Filament Based on Cryoem Map

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Model of Parm Filament Based on Cryoem Map (pdb code 4a6j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the Structural Model of Parm Filament Based on Cryoem Map, PDB code: 4a6j:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 10 in 4a6j

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Magnesium binding site 1 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:23.6
occ:1.00
 O1B A:ANP500 2.1 31.3 1.0
O2G A:ANP500 2.2 26.1 1.0
PB A:ANP500 3.4 17.9 1.0
PG A:ANP500 3.5 21.5 1.0
N3B A:ANP500 3.9 20.6 1.0
OE1 A:GLU148 3.9 34.1 1.0
O2A A:ANP500 4.1 22.8 1.0
OD1 A:ASP170 4.1 20.6 1.0
O3A A:ANP500 4.2 23.3 1.0
OD2 A:ASP6 4.2 19.9 1.0
NZ A:LYS13 4.2 18.2 1.0
O1G A:ANP500 4.3 25.7 1.0
OD1 A:ASP6 4.3 22.5 1.0
OD2 A:ASP170 4.4 24.5 1.0
O3G A:ANP500 4.5 21.1 1.0
O2B A:ANP500 4.5 20.4 1.0
CD A:GLU148 4.6 34.2 1.0
CA A:GLY8 4.6 19.5 1.0
CA A:GLY172 4.6 20.1 1.0
PA A:ANP500 4.6 18.6 1.0
CG A:ASP170 4.7 32.0 1.0
CG A:ASP6 4.7 19.2 1.0
CD2 A:LEU311 4.9 25.9 1.0

Magnesium binding site 2 out of 10 in 4a6j

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Magnesium binding site 2 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:23.6
occ:1.00
 O1B B:ANP500 2.1 31.3 1.0
O2G B:ANP500 2.2 26.1 1.0
PB B:ANP500 3.4 17.9 1.0
PG B:ANP500 3.5 21.5 1.0
N3B B:ANP500 3.9 20.6 1.0
OE1 B:GLU148 3.9 34.1 1.0
O2A B:ANP500 4.1 22.8 1.0
OD1 B:ASP170 4.1 20.6 1.0
O3A B:ANP500 4.2 23.3 1.0
OD2 B:ASP6 4.2 19.9 1.0
NZ B:LYS13 4.2 18.2 1.0
O1G B:ANP500 4.3 25.7 1.0
OD1 B:ASP6 4.3 22.5 1.0
OD2 B:ASP170 4.4 24.5 1.0
O3G B:ANP500 4.5 21.1 1.0
O2B B:ANP500 4.5 20.4 1.0
CD B:GLU148 4.6 34.2 1.0
CA B:GLY8 4.6 19.5 1.0
CA B:GLY172 4.6 20.1 1.0
PA B:ANP500 4.6 18.6 1.0
CG B:ASP170 4.7 32.0 1.0
CG B:ASP6 4.7 19.2 1.0
CD2 B:LEU311 4.9 25.9 1.0

Magnesium binding site 3 out of 10 in 4a6j

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Magnesium binding site 3 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg501

b:23.6
occ:1.00
 O1B C:ANP500 2.1 31.3 1.0
O2G C:ANP500 2.2 26.1 1.0
PB C:ANP500 3.4 17.9 1.0
PG C:ANP500 3.5 21.5 1.0
N3B C:ANP500 3.9 20.6 1.0
OE1 C:GLU148 3.9 34.1 1.0
O2A C:ANP500 4.1 22.8 1.0
OD1 C:ASP170 4.1 20.6 1.0
O3A C:ANP500 4.2 23.3 1.0
OD2 C:ASP6 4.2 19.9 1.0
NZ C:LYS13 4.2 18.2 1.0
O1G C:ANP500 4.3 25.7 1.0
OD1 C:ASP6 4.3 22.5 1.0
OD2 C:ASP170 4.4 24.5 1.0
O3G C:ANP500 4.5 21.1 1.0
O2B C:ANP500 4.5 20.4 1.0
CD C:GLU148 4.6 34.2 1.0
CA C:GLY8 4.6 19.5 1.0
CA C:GLY172 4.6 20.1 1.0
PA C:ANP500 4.6 18.6 1.0
CG C:ASP170 4.7 32.0 1.0
CG C:ASP6 4.7 19.2 1.0
CD2 C:LEU311 4.9 25.9 1.0

Magnesium binding site 4 out of 10 in 4a6j

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Magnesium binding site 4 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:23.6
occ:1.00
 O1B D:ANP500 2.1 31.3 1.0
O2G D:ANP500 2.2 26.1 1.0
PB D:ANP500 3.4 17.9 1.0
PG D:ANP500 3.5 21.5 1.0
N3B D:ANP500 3.9 20.6 1.0
OE1 D:GLU148 3.9 34.1 1.0
O2A D:ANP500 4.1 22.8 1.0
OD1 D:ASP170 4.1 20.6 1.0
O3A D:ANP500 4.2 23.3 1.0
OD2 D:ASP6 4.2 19.9 1.0
NZ D:LYS13 4.2 18.2 1.0
O1G D:ANP500 4.3 25.7 1.0
OD1 D:ASP6 4.3 22.5 1.0
OD2 D:ASP170 4.4 24.5 1.0
O3G D:ANP500 4.5 21.1 1.0
O2B D:ANP500 4.5 20.4 1.0
CD D:GLU148 4.6 34.2 1.0
CA D:GLY8 4.6 19.5 1.0
CA D:GLY172 4.6 20.1 1.0
PA D:ANP500 4.6 18.6 1.0
CG D:ASP170 4.7 32.0 1.0
CG D:ASP6 4.7 19.2 1.0
CD2 D:LEU311 4.9 25.9 1.0

Magnesium binding site 5 out of 10 in 4a6j

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Magnesium binding site 5 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg501

b:23.6
occ:1.00
 O1B E:ANP500 2.1 31.3 1.0
O2G E:ANP500 2.2 26.1 1.0
PB E:ANP500 3.4 17.9 1.0
PG E:ANP500 3.5 21.5 1.0
N3B E:ANP500 3.9 20.6 1.0
OE1 E:GLU148 3.9 34.1 1.0
O2A E:ANP500 4.1 22.8 1.0
OD1 E:ASP170 4.1 20.6 1.0
O3A E:ANP500 4.2 23.3 1.0
OD2 E:ASP6 4.2 19.9 1.0
NZ E:LYS13 4.2 18.2 1.0
O1G E:ANP500 4.3 25.7 1.0
OD1 E:ASP6 4.3 22.5 1.0
OD2 E:ASP170 4.4 24.5 1.0
O3G E:ANP500 4.5 21.1 1.0
O2B E:ANP500 4.5 20.4 1.0
CD E:GLU148 4.6 34.2 1.0
CA E:GLY8 4.6 19.5 1.0
CA E:GLY172 4.6 20.1 1.0
PA E:ANP500 4.6 18.6 1.0
CG E:ASP170 4.7 32.0 1.0
CG E:ASP6 4.7 19.2 1.0
CD2 E:LEU311 4.9 25.9 1.0

Magnesium binding site 6 out of 10 in 4a6j

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Magnesium binding site 6 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:23.6
occ:1.00
 O1B F:ANP500 2.1 31.3 1.0
O2G F:ANP500 2.2 26.1 1.0
PB F:ANP500 3.4 17.9 1.0
PG F:ANP500 3.5 21.5 1.0
N3B F:ANP500 3.9 20.6 1.0
OE1 F:GLU148 3.9 34.1 1.0
O2A F:ANP500 4.1 22.8 1.0
OD1 F:ASP170 4.1 20.6 1.0
O3A F:ANP500 4.2 23.3 1.0
OD2 F:ASP6 4.2 19.9 1.0
NZ F:LYS13 4.2 18.2 1.0
O1G F:ANP500 4.3 25.7 1.0
OD1 F:ASP6 4.3 22.5 1.0
OD2 F:ASP170 4.4 24.5 1.0
O3G F:ANP500 4.5 21.1 1.0
O2B F:ANP500 4.5 20.4 1.0
CD F:GLU148 4.6 34.2 1.0
CA F:GLY8 4.6 19.5 1.0
CA F:GLY172 4.6 20.1 1.0
PA F:ANP500 4.6 18.6 1.0
CG F:ASP170 4.7 32.0 1.0
CG F:ASP6 4.7 19.2 1.0
CD2 F:LEU311 4.9 25.9 1.0

Magnesium binding site 7 out of 10 in 4a6j

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Magnesium binding site 7 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg501

b:23.6
occ:1.00
 O1B G:ANP500 2.1 31.3 1.0
O2G G:ANP500 2.2 26.1 1.0
PB G:ANP500 3.4 17.9 1.0
PG G:ANP500 3.5 21.5 1.0
N3B G:ANP500 3.9 20.6 1.0
OE1 G:GLU148 3.9 34.1 1.0
O2A G:ANP500 4.1 22.8 1.0
OD1 G:ASP170 4.1 20.6 1.0
O3A G:ANP500 4.2 23.3 1.0
OD2 G:ASP6 4.2 19.9 1.0
NZ G:LYS13 4.2 18.2 1.0
O1G G:ANP500 4.3 25.7 1.0
OD1 G:ASP6 4.3 22.5 1.0
OD2 G:ASP170 4.4 24.5 1.0
O3G G:ANP500 4.5 21.1 1.0
O2B G:ANP500 4.5 20.4 1.0
CD G:GLU148 4.6 34.2 1.0
CA G:GLY8 4.6 19.5 1.0
CA G:GLY172 4.6 20.1 1.0
PA G:ANP500 4.6 18.6 1.0
CG G:ASP170 4.7 32.0 1.0
CG G:ASP6 4.7 19.2 1.0
CD2 G:LEU311 4.9 25.9 1.0

Magnesium binding site 8 out of 10 in 4a6j

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Magnesium binding site 8 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg501

b:23.6
occ:1.00
 O1B H:ANP500 2.1 31.3 1.0
O2G H:ANP500 2.2 26.1 1.0
PB H:ANP500 3.4 17.9 1.0
PG H:ANP500 3.5 21.5 1.0
N3B H:ANP500 3.9 20.6 1.0
OE1 H:GLU148 3.9 34.1 1.0
O2A H:ANP500 4.1 22.8 1.0
OD1 H:ASP170 4.1 20.6 1.0
O3A H:ANP500 4.2 23.3 1.0
OD2 H:ASP6 4.2 19.9 1.0
NZ H:LYS13 4.2 18.2 1.0
O1G H:ANP500 4.3 25.7 1.0
OD1 H:ASP6 4.3 22.5 1.0
OD2 H:ASP170 4.4 24.5 1.0
O3G H:ANP500 4.5 21.1 1.0
O2B H:ANP500 4.5 20.4 1.0
CD H:GLU148 4.6 34.2 1.0
CA H:GLY8 4.6 19.5 1.0
CA H:GLY172 4.6 20.1 1.0
PA H:ANP500 4.6 18.6 1.0
CG H:ASP170 4.7 32.0 1.0
CG H:ASP6 4.7 19.2 1.0
CD2 H:LEU311 4.9 25.9 1.0

Magnesium binding site 9 out of 10 in 4a6j

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Magnesium binding site 9 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg501

b:23.6
occ:1.00
 O1B I:ANP500 2.1 31.3 1.0
O2G I:ANP500 2.2 26.1 1.0
PB I:ANP500 3.4 17.9 1.0
PG I:ANP500 3.5 21.5 1.0
N3B I:ANP500 3.9 20.6 1.0
OE1 I:GLU148 3.9 34.1 1.0
O2A I:ANP500 4.1 22.8 1.0
OD1 I:ASP170 4.1 20.6 1.0
O3A I:ANP500 4.2 23.3 1.0
OD2 I:ASP6 4.2 19.9 1.0
NZ I:LYS13 4.2 18.2 1.0
O1G I:ANP500 4.3 25.7 1.0
OD1 I:ASP6 4.3 22.5 1.0
OD2 I:ASP170 4.4 24.5 1.0
O3G I:ANP500 4.5 21.1 1.0
O2B I:ANP500 4.5 20.4 1.0
CD I:GLU148 4.6 34.2 1.0
CA I:GLY8 4.6 19.5 1.0
CA I:GLY172 4.6 20.1 1.0
PA I:ANP500 4.6 18.6 1.0
CG I:ASP170 4.7 32.0 1.0
CG I:ASP6 4.7 19.2 1.0
CD2 I:LEU311 4.9 25.9 1.0

Magnesium binding site 10 out of 10 in 4a6j

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Magnesium binding site 10 out of 10 in the Structural Model of Parm Filament Based on Cryoem Map


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structural Model of Parm Filament Based on Cryoem Map within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg501

b:23.6
occ:1.00
 O1B J:ANP500 2.1 31.3 1.0
O2G J:ANP500 2.2 26.1 1.0
PB J:ANP500 3.4 17.9 1.0
PG J:ANP500 3.5 21.5 1.0
N3B J:ANP500 3.9 20.6 1.0
OE1 J:GLU148 3.9 34.1 1.0
O2A J:ANP500 4.1 22.8 1.0
OD1 J:ASP170 4.1 20.6 1.0
O3A J:ANP500 4.2 23.3 1.0
OD2 J:ASP6 4.2 19.9 1.0
NZ J:LYS13 4.2 18.2 1.0
O1G J:ANP500 4.3 25.7 1.0
OD1 J:ASP6 4.3 22.5 1.0
OD2 J:ASP170 4.4 24.5 1.0
O3G J:ANP500 4.5 21.1 1.0
O2B J:ANP500 4.5 20.4 1.0
CD J:GLU148 4.6 34.2 1.0
CA J:GLY8 4.6 19.5 1.0
CA J:GLY172 4.6 20.1 1.0
PA J:ANP500 4.6 18.6 1.0
CG J:ASP170 4.7 32.0 1.0
CG J:ASP6 4.7 19.2 1.0
CD2 J:LEU311 4.9 25.9 1.0

Reference:

P.Gayathri, T.Fujii, J.Moller-Jensen, F.Van Den Ent, K.Namba, J.Lowe. A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation. Science V. 338 1334 2012.
ISSN: ISSN 0036-8075
PubMed: 23112295
DOI: 10.1126/SCIENCE.1229091
Page generated: Thu Aug 15 14:21:40 2024

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