Magnesium in PDB 4aar: Atp-Triggered Molecular Mechanics of the Chaperonin Groel

The binding sites of Magnesium atom in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel (pdb code 4aar). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel, PDB code: 4aar:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1527 b:0.0 occ:0.00 O3G A:ATP1525 1.8 0.0 1.0 O1B A:ATP1525 1.8 0.0 1.0 OD1 A:ASP87 1.8 0.0 1.0 O2A A:ATP1525 1.8 0.0 1.0 OD2 A:ASP87 1.9 0.0 1.0 CG A:ASP87 2.2 0.0 1.0 PB A:ATP1525 2.9 0.0 1.0 PG A:ATP1525 3.0 0.0 1.0 PA A:ATP1525 3.1 0.0 1.0 O3B A:ATP1525 3.4 0.0 1.0 O3A A:ATP1525 3.5 0.0 1.0 O2G A:ATP1525 3.6 0.0 1.0 CB A:ASP87 3.6 0.0 1.0 H5' A:ATP1525 3.8 0.0 1.0 N A:GLY88 3.8 0.0 1.0 O1A A:ATP1525 4.0 0.0 1.0 O5' A:ATP1525 4.2 0.0 1.0 CA A:ASP87 4.2 0.0 1.0 O1G A:ATP1525 4.2 0.0 1.0 O2B A:ATP1525 4.3 0.0 1.0 C5' A:ATP1525 4.4 0.0 1.0 C A:ASP87 4.5 0.0 1.0 CA A:GLY88 4.7 0.0 1.0 H5'1 A:ATP1525 4.8 0.0 1.0

Magnesium binding site 2 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1527 b:0.0 occ:0.00 O3G B:ATP1525 1.8 0.0 1.0 O1B B:ATP1525 1.8 0.0 1.0 OD1 B:ASP87 1.8 0.0 1.0 O2A B:ATP1525 1.8 0.0 1.0 OD2 B:ASP87 1.9 0.0 1.0 CG B:ASP87 2.2 0.0 1.0 PB B:ATP1525 2.9 0.0 1.0 PG B:ATP1525 3.0 0.0 1.0 PA B:ATP1525 3.1 0.0 1.0 O3B B:ATP1525 3.3 0.0 1.0 O3A B:ATP1525 3.5 0.0 1.0 O2G B:ATP1525 3.6 0.0 1.0 CB B:ASP87 3.6 0.0 1.0 H5' B:ATP1525 3.8 0.0 1.0 N B:GLY88 3.8 0.0 1.0 O1A B:ATP1525 4.0 0.0 1.0 O5' B:ATP1525 4.2 0.0 1.0 CA B:ASP87 4.2 0.0 1.0 O1G B:ATP1525 4.2 0.0 1.0 O2B B:ATP1525 4.3 0.0 1.0 C5' B:ATP1525 4.4 0.0 1.0 C B:ASP87 4.5 0.0 1.0 CA B:GLY88 4.7 0.0 1.0 H5'1 B:ATP1525 4.8 0.0 1.0

Magnesium binding site 3 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1525 b:0.0 occ:0.00 O3G C:ATP1526 1.8 0.0 1.0 O1B C:ATP1526 1.8 0.0 1.0 OD1 C:ASP87 1.8 0.0 1.0 O2A C:ATP1526 1.8 0.0 1.0 OD2 C:ASP87 1.9 0.0 1.0 CG C:ASP87 2.2 0.0 1.0 PB C:ATP1526 2.9 0.0 1.0 PG C:ATP1526 3.0 0.0 1.0 PA C:ATP1526 3.1 0.0 1.0 O3B C:ATP1526 3.3 0.0 1.0 O3A C:ATP1526 3.5 0.0 1.0 O2G C:ATP1526 3.6 0.0 1.0 CB C:ASP87 3.6 0.0 1.0 H5' C:ATP1526 3.8 0.0 1.0 N C:GLY88 3.8 0.0 1.0 O1A C:ATP1526 4.0 0.0 1.0 O5' C:ATP1526 4.2 0.0 1.0 CA C:ASP87 4.2 0.0 1.0 O1G C:ATP1526 4.2 0.0 1.0 O2B C:ATP1526 4.3 0.0 1.0 C5' C:ATP1526 4.4 0.0 1.0 C C:ASP87 4.5 0.0 1.0 CA C:GLY88 4.7 0.0 1.0 H5'1 C:ATP1526 4.8 0.0 1.0

Magnesium binding site 4 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1527 b:0.0 occ:0.00 O3G D:ATP1525 1.8 0.0 1.0 O1B D:ATP1525 1.8 0.0 1.0 OD1 D:ASP87 1.8 0.0 1.0 O2A D:ATP1525 1.8 0.0 1.0 OD2 D:ASP87 1.9 0.0 1.0 CG D:ASP87 2.2 0.0 1.0 PB D:ATP1525 2.9 0.0 1.0 PG D:ATP1525 3.0 0.0 1.0 PA D:ATP1525 3.1 0.0 1.0 O3B D:ATP1525 3.3 0.0 1.0 O3A D:ATP1525 3.5 0.0 1.0 O2G D:ATP1525 3.6 0.0 1.0 CB D:ASP87 3.6 0.0 1.0 H5' D:ATP1525 3.8 0.0 1.0 N D:GLY88 3.8 0.0 1.0 O1A D:ATP1525 4.0 0.0 1.0 O5' D:ATP1525 4.2 0.0 1.0 CA D:ASP87 4.2 0.0 1.0 O1G D:ATP1525 4.2 0.0 1.0 O2B D:ATP1525 4.3 0.0 1.0 C5' D:ATP1525 4.4 0.0 1.0 C D:ASP87 4.5 0.0 1.0 CA D:GLY88 4.7 0.0 1.0 H5'1 D:ATP1525 4.8 0.0 1.0

Magnesium binding site 5 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1525 b:0.0 occ:0.00 O3G E:ATP1527 1.8 0.0 1.0 O1B E:ATP1527 1.8 0.0 1.0 OD1 E:ASP87 1.8 0.0 1.0 O2A E:ATP1527 1.8 0.0 1.0 OD2 E:ASP87 1.9 0.0 1.0 CG E:ASP87 2.2 0.0 1.0 PB E:ATP1527 2.9 0.0 1.0 PG E:ATP1527 3.0 0.0 1.0 PA E:ATP1527 3.1 0.0 1.0 O3B E:ATP1527 3.3 0.0 1.0 O3A E:ATP1527 3.5 0.0 1.0 O2G E:ATP1527 3.6 0.0 1.0 CB E:ASP87 3.6 0.0 1.0 H5' E:ATP1527 3.8 0.0 1.0 N E:GLY88 3.8 0.0 1.0 O1A E:ATP1527 4.0 0.0 1.0 O5' E:ATP1527 4.2 0.0 1.0 CA E:ASP87 4.2 0.0 1.0 O1G E:ATP1527 4.2 0.0 1.0 O2B E:ATP1527 4.3 0.0 1.0 C5' E:ATP1527 4.4 0.0 1.0 C E:ASP87 4.5 0.0 1.0 CA E:GLY88 4.7 0.0 1.0 H5'1 E:ATP1527 4.8 0.0 1.0

Magnesium binding site 6 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1526 b:0.0 occ:0.00 O3G F:ATP1527 1.8 0.0 1.0 O1B F:ATP1527 1.8 0.0 1.0 OD1 F:ASP87 1.8 0.0 1.0 O2A F:ATP1527 1.8 0.0 1.0 OD2 F:ASP87 1.9 0.0 1.0 CG F:ASP87 2.2 0.0 1.0 PB F:ATP1527 2.9 0.0 1.0 PG F:ATP1527 3.0 0.0 1.0 PA F:ATP1527 3.1 0.0 1.0 O3B F:ATP1527 3.3 0.0 1.0 O3A F:ATP1527 3.5 0.0 1.0 O2G F:ATP1527 3.6 0.0 1.0 CB F:ASP87 3.6 0.0 1.0 H5' F:ATP1527 3.8 0.0 1.0 N F:GLY88 3.8 0.0 1.0 O1A F:ATP1527 4.0 0.0 1.0 O5' F:ATP1527 4.2 0.0 1.0 CA F:ASP87 4.2 0.0 1.0 O1G F:ATP1527 4.2 0.0 1.0 O2B F:ATP1527 4.3 0.0 1.0 C5' F:ATP1527 4.4 0.0 1.0 C F:ASP87 4.5 0.0 1.0 CA F:GLY88 4.7 0.0 1.0 H5'1 F:ATP1527 4.8 0.0 1.0

Magnesium binding site 7 out of 7 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1526 b:0.0 occ:0.00 O3G G:ATP1527 1.8 0.0 1.0 O1B G:ATP1527 1.8 0.0 1.0 OD1 G:ASP87 1.8 0.0 1.0 O2A G:ATP1527 1.8 0.0 1.0 OD2 G:ASP87 1.9 0.0 1.0 CG G:ASP87 2.2 0.0 1.0 PB G:ATP1527 2.9 0.0 1.0 PG G:ATP1527 3.0 0.0 1.0 PA G:ATP1527 3.1 0.0 1.0 O3B G:ATP1527 3.4 0.0 1.0 O3A G:ATP1527 3.5 0.0 1.0 O2G G:ATP1527 3.6 0.0 1.0 CB G:ASP87 3.6 0.0 1.0 H5' G:ATP1527 3.8 0.0 1.0 N G:GLY88 3.8 0.0 1.0 O1A G:ATP1527 4.0 0.0 1.0 O5' G:ATP1527 4.2 0.0 1.0 CA G:ASP87 4.2 0.0 1.0 O1G G:ATP1527 4.2 0.0 1.0 O2B G:ATP1527 4.3 0.0 1.0 C5' G:ATP1527 4.4 0.0 1.0 C G:ASP87 4.5 0.0 1.0 CA G:GLY88 4.7 0.0 1.0 H5'1 G:ATP1527 4.8 0.0 1.0

D.K.Clare, D.Vasishtan, S.Stagg, J.Quispe, G.W.Farr, M.Topf, A.L.Horwich, H.R.Saibil. Atp-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) V. 149 113 2012.
ISSN: ISSN 0092-8674
PubMed: 22445172
DOI: 10.1016/J.CELL.2012.02.047