Magnesium in PDB 4ab2: Atp-Triggered Molecular Mechanics of the Chaperonin Groel
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
(pdb code 4ab2). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
Atp-Triggered Molecular Mechanics of the Chaperonin Groel, PDB code: 4ab2:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 1 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1527
b:0.0
occ:0.00
|
O3G
|
A:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
A:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
A:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
A:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
A:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
A:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
A:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
A:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
A:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
A:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
A:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
A:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
A:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
A:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
A:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
A:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
A:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
A:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
A:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
A:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
A:SER151
|
4.1
|
0.0
|
1.0
|
|
C
|
A:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
A:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
A:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
A:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
A:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
A:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
A:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
A:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
A:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
A:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
A:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
A:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 2 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1527
b:0.0
occ:0.00
|
O3G
|
B:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
B:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
B:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
B:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
B:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
B:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
B:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
B:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
B:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
B:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
B:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
B:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
B:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
B:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
B:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
B:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
B:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
B:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
B:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
B:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
B:SER151
|
4.1
|
0.0
|
1.0
|
|
C
|
B:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
B:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
B:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
B:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
B:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
B:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
B:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
B:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
B:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
B:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
B:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
B:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 3 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1527
b:0.0
occ:0.00
|
O3G
|
C:ATP1526
|
1.8
|
0.0
|
1.0
|
|
O1B
|
C:ATP1526
|
1.8
|
0.0
|
1.0
|
|
O2A
|
C:ATP1526
|
1.8
|
0.0
|
1.0
|
|
OD1
|
C:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
C:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
C:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
C:ATP1526
|
2.9
|
0.0
|
1.0
|
|
PG
|
C:ATP1526
|
2.9
|
0.0
|
1.0
|
|
PA
|
C:ATP1526
|
3.1
|
0.0
|
1.0
|
|
O
|
C:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
C:ATP1526
|
3.3
|
0.0
|
1.0
|
|
O2G
|
C:ATP1526
|
3.4
|
0.0
|
1.0
|
|
O3A
|
C:ATP1526
|
3.5
|
0.0
|
1.0
|
|
CA
|
C:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
C:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
C:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
C:ATP1526
|
3.9
|
0.0
|
1.0
|
|
C
|
C:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
C:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
C:ATP1526
|
4.1
|
0.0
|
1.0
|
|
N
|
C:SER151
|
4.1
|
0.0
|
1.0
|
|
C
|
C:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
C:ATP1526
|
4.2
|
0.0
|
1.0
|
|
O1G
|
C:ATP1526
|
4.3
|
0.0
|
1.0
|
|
O5'
|
C:ATP1526
|
4.3
|
0.0
|
1.0
|
|
CA
|
C:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
C:ATP1526
|
4.5
|
0.0
|
1.0
|
|
C5'
|
C:ATP1526
|
4.5
|
0.0
|
1.0
|
|
CG2
|
C:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
C:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
C:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
C:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
C:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 4 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1527
b:0.0
occ:0.00
|
O3G
|
D:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
D:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
D:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
D:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
D:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
D:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
D:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
D:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
D:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
D:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
D:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
D:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
D:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
D:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
D:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
D:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
D:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
D:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
D:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
D:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
D:SER151
|
4.2
|
0.0
|
1.0
|
|
C
|
D:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
D:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
D:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
D:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
D:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
D:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
D:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
D:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
D:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
D:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
D:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
D:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 5 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1526
b:0.0
occ:0.00
|
O3G
|
E:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
E:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
E:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
E:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
E:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
E:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
E:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
E:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
E:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
E:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
E:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
E:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
E:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
E:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
E:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
E:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
E:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
E:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
E:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
E:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
E:SER151
|
4.1
|
0.0
|
1.0
|
|
C
|
E:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
E:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
E:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
E:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
E:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
E:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
E:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
E:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
E:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
E:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
E:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
E:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 6 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1527
b:0.0
occ:0.00
|
O3G
|
F:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
F:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
F:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
F:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
F:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
F:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
F:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
F:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
F:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
F:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
F:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
F:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
F:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
F:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
F:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
F:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
F:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
F:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
F:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
F:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
F:SER151
|
4.2
|
0.0
|
1.0
|
|
C
|
F:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
F:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
F:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
F:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
F:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
F:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
F:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
F:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
F:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
F:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
F:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
F:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 7 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1527
b:0.0
occ:0.00
|
O3G
|
G:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
G:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O2A
|
G:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
G:ASP87
|
1.9
|
0.0
|
1.0
|
|
OD2
|
G:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
G:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
G:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
G:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
G:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
G:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
G:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
G:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
G:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
G:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
G:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
G:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
G:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
G:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
G:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
G:ATP1525
|
4.1
|
0.0
|
1.0
|
|
N
|
G:SER151
|
4.1
|
0.0
|
1.0
|
|
C
|
G:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
G:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
G:ATP1525
|
4.3
|
0.0
|
1.0
|
|
O5'
|
G:ATP1525
|
4.3
|
0.0
|
1.0
|
|
CA
|
G:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
G:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C5'
|
G:ATP1525
|
4.5
|
0.0
|
1.0
|
|
CG2
|
G:ILE150
|
4.6
|
0.0
|
1.0
|
|
C
|
G:ASP87
|
4.6
|
0.0
|
1.0
|
|
CB
|
G:SER151
|
4.7
|
0.0
|
1.0
|
|
CA
|
G:GLY88
|
4.7
|
0.0
|
1.0
|
|
P
|
G:PO41528
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 8 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg1526
b:0.0
occ:0.00
|
O3G
|
H:ATP1527
|
1.8
|
0.0
|
1.0
|
|
O1B
|
H:ATP1527
|
1.8
|
0.0
|
1.0
|
|
OD1
|
H:ASP87
|
1.8
|
0.0
|
1.0
|
|
O2A
|
H:ATP1527
|
1.8
|
0.0
|
1.0
|
|
OD2
|
H:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
H:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
H:ATP1527
|
2.9
|
0.0
|
1.0
|
|
PG
|
H:ATP1527
|
2.9
|
0.0
|
1.0
|
|
PA
|
H:ATP1527
|
3.1
|
0.0
|
1.0
|
|
O
|
H:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
H:ATP1527
|
3.3
|
0.0
|
1.0
|
|
O2G
|
H:ATP1527
|
3.4
|
0.0
|
1.0
|
|
O3A
|
H:ATP1527
|
3.5
|
0.0
|
1.0
|
|
CA
|
H:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
H:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
H:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
H:ATP1527
|
3.9
|
0.0
|
1.0
|
|
C
|
H:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
H:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
H:ATP1527
|
4.0
|
0.0
|
1.0
|
|
C
|
H:SER151
|
4.1
|
0.0
|
1.0
|
|
N
|
H:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
H:ATP1527
|
4.2
|
0.0
|
1.0
|
|
O5'
|
H:ATP1527
|
4.2
|
0.0
|
1.0
|
|
O1G
|
H:ATP1527
|
4.2
|
0.0
|
1.0
|
|
P
|
H:PO41528
|
4.3
|
0.0
|
1.0
|
|
CA
|
H:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
H:ATP1527
|
4.4
|
0.0
|
1.0
|
|
C5'
|
H:ATP1527
|
4.5
|
0.0
|
1.0
|
|
C
|
H:ASP87
|
4.6
|
0.0
|
1.0
|
|
CA
|
H:GLY88
|
4.6
|
0.0
|
1.0
|
|
CG2
|
H:ILE150
|
4.7
|
0.0
|
1.0
|
|
CB
|
H:SER151
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 9 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg1526
b:0.0
occ:0.00
|
O3G
|
I:ATP1525
|
1.8
|
0.0
|
1.0
|
|
O1B
|
I:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD1
|
I:ASP87
|
1.8
|
0.0
|
1.0
|
|
O2A
|
I:ATP1525
|
1.8
|
0.0
|
1.0
|
|
OD2
|
I:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
I:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
I:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PG
|
I:ATP1525
|
2.9
|
0.0
|
1.0
|
|
PA
|
I:ATP1525
|
3.1
|
0.0
|
1.0
|
|
O
|
I:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
I:ATP1525
|
3.3
|
0.0
|
1.0
|
|
O2G
|
I:ATP1525
|
3.4
|
0.0
|
1.0
|
|
O3A
|
I:ATP1525
|
3.5
|
0.0
|
1.0
|
|
CA
|
I:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
I:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
I:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
I:ATP1525
|
3.9
|
0.0
|
1.0
|
|
C
|
I:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
I:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
I:ATP1525
|
4.0
|
0.0
|
1.0
|
|
C
|
I:SER151
|
4.1
|
0.0
|
1.0
|
|
N
|
I:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
I:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O5'
|
I:ATP1525
|
4.2
|
0.0
|
1.0
|
|
O1G
|
I:ATP1525
|
4.2
|
0.0
|
1.0
|
|
P
|
I:PO41528
|
4.3
|
0.0
|
1.0
|
|
CA
|
I:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
I:ATP1525
|
4.4
|
0.0
|
1.0
|
|
C5'
|
I:ATP1525
|
4.5
|
0.0
|
1.0
|
|
C
|
I:ASP87
|
4.6
|
0.0
|
1.0
|
|
CA
|
I:GLY88
|
4.6
|
0.0
|
1.0
|
|
CG2
|
I:ILE150
|
4.7
|
0.0
|
1.0
|
|
CB
|
I:SER151
|
4.7
|
0.0
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 4ab2
Go back to
Magnesium Binding Sites List in 4ab2
Magnesium binding site 10 out
of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg1527
b:0.0
occ:0.00
|
O3G
|
J:ATP1526
|
1.8
|
0.0
|
1.0
|
|
O1B
|
J:ATP1526
|
1.8
|
0.0
|
1.0
|
|
OD1
|
J:ASP87
|
1.8
|
0.0
|
1.0
|
|
O2A
|
J:ATP1526
|
1.8
|
0.0
|
1.0
|
|
OD2
|
J:ASP87
|
2.0
|
0.0
|
1.0
|
|
CG
|
J:ASP87
|
2.3
|
0.0
|
1.0
|
|
PB
|
J:ATP1526
|
2.9
|
0.0
|
1.0
|
|
PG
|
J:ATP1526
|
2.9
|
0.0
|
1.0
|
|
PA
|
J:ATP1526
|
3.1
|
0.0
|
1.0
|
|
O
|
J:ILE150
|
3.1
|
0.0
|
1.0
|
|
O3B
|
J:ATP1526
|
3.3
|
0.0
|
1.0
|
|
O2G
|
J:ATP1526
|
3.4
|
0.0
|
1.0
|
|
O3A
|
J:ATP1526
|
3.5
|
0.0
|
1.0
|
|
CA
|
J:SER151
|
3.7
|
0.0
|
1.0
|
|
CB
|
J:ASP87
|
3.8
|
0.0
|
1.0
|
|
N
|
J:GLY88
|
3.8
|
0.0
|
1.0
|
|
O1A
|
J:ATP1526
|
3.9
|
0.0
|
1.0
|
|
C
|
J:ILE150
|
3.9
|
0.0
|
1.0
|
|
O
|
J:SER151
|
4.0
|
0.0
|
1.0
|
|
H5'
|
J:ATP1526
|
4.0
|
0.0
|
1.0
|
|
C
|
J:SER151
|
4.1
|
0.0
|
1.0
|
|
N
|
J:SER151
|
4.2
|
0.0
|
1.0
|
|
O2B
|
J:ATP1526
|
4.2
|
0.0
|
1.0
|
|
O5'
|
J:ATP1526
|
4.2
|
0.0
|
1.0
|
|
O1G
|
J:ATP1526
|
4.2
|
0.0
|
1.0
|
|
P
|
J:PO41528
|
4.3
|
0.0
|
1.0
|
|
CA
|
J:ASP87
|
4.4
|
0.0
|
1.0
|
|
H5'1
|
J:ATP1526
|
4.4
|
0.0
|
1.0
|
|
C5'
|
J:ATP1526
|
4.5
|
0.0
|
1.0
|
|
C
|
J:ASP87
|
4.6
|
0.0
|
1.0
|
|
CA
|
J:GLY88
|
4.6
|
0.0
|
1.0
|
|
CG2
|
J:ILE150
|
4.7
|
0.0
|
1.0
|
|
CB
|
J:SER151
|
4.7
|
0.0
|
1.0
|
|
Reference:
D.K.Clare,
D.Vasishtan,
S.Stagg,
J.Quispe,
G.W.Farr,
M.Topf,
A.L.Horwich,
H.R.Saibil.
Atp-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) V. 149 113 2012.
ISSN: ISSN 0092-8674
PubMed: 22445172
DOI: 10.1016/J.CELL.2012.02.047
Page generated: Thu Aug 15 14:27:33 2024
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