Magnesium in PDB 4ab3: Atp-Triggered Molecular Mechanics of the Chaperonin Groel

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel (pdb code 4ab3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel, PDB code: 4ab3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1526 b:0.0 occ:1.00 O3G A:ATP1527 1.8 0.0 1.0 O1B A:ATP1527 1.8 0.0 1.0 O2A A:ATP1527 1.8 0.0 1.0 OD1 A:ASP87 1.9 0.0 1.0 OD2 A:ASP87 1.9 0.0 1.0 CG A:ASP87 2.2 0.0 1.0 PB A:ATP1527 2.9 0.0 1.0 PG A:ATP1527 3.0 0.0 1.0 PA A:ATP1527 3.1 0.0 1.0 O A:SER151 3.4 0.0 1.0 O3B A:ATP1527 3.4 0.0 1.0 O3A A:ATP1527 3.5 0.0 1.0 O2G A:ATP1527 3.5 0.0 1.0 N A:GLY88 3.6 0.0 1.0 CB A:ASP87 3.7 0.0 1.0 O5' A:ATP1527 4.1 0.0 1.0 O1A A:ATP1527 4.1 0.0 1.0 CA A:ASP87 4.2 0.0 1.0 O1G A:ATP1527 4.2 0.0 1.0 O2B A:ATP1527 4.3 0.0 1.0 C A:SER151 4.3 0.0 1.0 C5' A:ATP1527 4.3 0.0 1.0 P A:PO41525 4.4 0.0 1.0 C A:ASP87 4.4 0.0 1.0 CA A:GLY88 4.5 0.0 1.0 CA A:SER151 5.0 0.0 1.0

Magnesium binding site 2 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1526 b:0.0 occ:1.00 O3G B:ATP1527 1.8 0.0 1.0 O2A B:ATP1527 1.8 0.0 1.0 O1B B:ATP1527 1.8 0.0 1.0 OD1 B:ASP87 1.9 0.0 1.0 OD2 B:ASP87 1.9 0.0 1.0 CG B:ASP87 2.2 0.0 1.0 PB B:ATP1527 2.9 0.0 1.0 PG B:ATP1527 3.0 0.0 1.0 PA B:ATP1527 3.1 0.0 1.0 O B:SER151 3.3 0.0 1.0 O3A B:ATP1527 3.4 0.0 1.0 O3B B:ATP1527 3.5 0.0 1.0 O2G B:ATP1527 3.5 0.0 1.0 N B:GLY88 3.5 0.0 1.0 CB B:ASP87 3.7 0.0 1.0 O5' B:ATP1527 3.8 0.0 1.0 CA B:ASP87 4.2 0.0 1.0 C B:SER151 4.2 0.0 1.0 O1A B:ATP1527 4.2 0.0 1.0 O1G B:ATP1527 4.3 0.0 1.0 O2B B:ATP1527 4.3 0.0 1.0 C B:ASP87 4.4 0.0 1.0 CA B:GLY88 4.4 0.0 1.0 P B:PO41525 4.5 0.0 1.0 CA B:SER151 4.8 0.0 1.0 C5' B:ATP1527 4.8 0.0 1.0

Magnesium binding site 3 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1526 b:0.0 occ:1.00 O3G C:ATP1527 1.8 0.0 1.0 O1B C:ATP1527 1.8 0.0 1.0 O2A C:ATP1527 1.8 0.0 1.0 OD1 C:ASP87 1.9 0.0 1.0 OD2 C:ASP87 1.9 0.0 1.0 CG C:ASP87 2.2 0.0 1.0 PB C:ATP1527 2.9 0.0 1.0 PG C:ATP1527 3.0 0.0 1.0 PA C:ATP1527 3.1 0.0 1.0 O C:SER151 3.4 0.0 1.0 O3B C:ATP1527 3.4 0.0 1.0 O3A C:ATP1527 3.5 0.0 1.0 O2G C:ATP1527 3.5 0.0 1.0 N C:GLY88 3.6 0.0 1.0 CB C:ASP87 3.7 0.0 1.0 O5' C:ATP1527 4.1 0.0 1.0 O1A C:ATP1527 4.1 0.0 1.0 CA C:ASP87 4.2 0.0 1.0 O1G C:ATP1527 4.2 0.0 1.0 O2B C:ATP1527 4.3 0.0 1.0 C C:SER151 4.3 0.0 1.0 C5' C:ATP1527 4.3 0.0 1.0 P C:PO41525 4.4 0.0 1.0 C C:ASP87 4.4 0.0 1.0 CA C:GLY88 4.5 0.0 1.0 CA C:SER151 5.0 0.0 1.0

Magnesium binding site 4 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1526 b:0.0 occ:1.00 O3G D:ATP1527 1.8 0.0 1.0 O1B D:ATP1527 1.8 0.0 1.0 O2A D:ATP1527 1.8 0.0 1.0 OD1 D:ASP87 1.9 0.0 1.0 OD2 D:ASP87 1.9 0.0 1.0 CG D:ASP87 2.2 0.0 1.0 PB D:ATP1527 2.9 0.0 1.0 PG D:ATP1527 3.0 0.0 1.0 PA D:ATP1527 3.1 0.0 1.0 O D:SER151 3.3 0.0 1.0 O3A D:ATP1527 3.4 0.0 1.0 O3B D:ATP1527 3.5 0.0 1.0 O2G D:ATP1527 3.5 0.0 1.0 N D:GLY88 3.5 0.0 1.0 CB D:ASP87 3.7 0.0 1.0 O5' D:ATP1527 3.8 0.0 1.0 CA D:ASP87 4.2 0.0 1.0 C D:SER151 4.2 0.0 1.0 O1G D:ATP1527 4.3 0.0 1.0 O1A D:ATP1527 4.3 0.0 1.0 O2B D:ATP1527 4.3 0.0 1.0 C D:ASP87 4.4 0.0 1.0 CA D:GLY88 4.4 0.0 1.0 P D:PO41525 4.5 0.0 1.0 C5' D:ATP1527 4.8 0.0 1.0 CA D:SER151 4.8 0.0 1.0

Magnesium binding site 5 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1526 b:0.0 occ:1.00 O3G E:ATP1527 1.8 0.0 1.0 O1B E:ATP1527 1.8 0.0 1.0 O2A E:ATP1527 1.8 0.0 1.0 OD1 E:ASP87 1.9 0.0 1.0 OD2 E:ASP87 1.9 0.0 1.0 CG E:ASP87 2.2 0.0 1.0 PB E:ATP1527 2.9 0.0 1.0 PG E:ATP1527 3.0 0.0 1.0 PA E:ATP1527 3.1 0.0 1.0 O E:SER151 3.4 0.0 1.0 O3B E:ATP1527 3.4 0.0 1.0 O3A E:ATP1527 3.5 0.0 1.0 O2G E:ATP1527 3.5 0.0 1.0 N E:GLY88 3.6 0.0 1.0 CB E:ASP87 3.7 0.0 1.0 O5' E:ATP1527 4.1 0.0 1.0 O1A E:ATP1527 4.1 0.0 1.0 CA E:ASP87 4.2 0.0 1.0 O1G E:ATP1527 4.2 0.0 1.0 O2B E:ATP1527 4.3 0.0 1.0 C E:SER151 4.3 0.0 1.0 C5' E:ATP1527 4.3 0.0 1.0 P E:PO41525 4.4 0.0 1.0 C E:ASP87 4.4 0.0 1.0 CA E:GLY88 4.5 0.0 1.0 CA E:SER151 5.0 0.0 1.0

Magnesium binding site 6 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1526 b:0.0 occ:1.00 O3G F:ATP1527 1.8 0.0 1.0 O1B F:ATP1527 1.8 0.0 1.0 O2A F:ATP1527 1.8 0.0 1.0 OD1 F:ASP87 1.9 0.0 1.0 OD2 F:ASP87 1.9 0.0 1.0 CG F:ASP87 2.2 0.0 1.0 PB F:ATP1527 2.9 0.0 1.0 PG F:ATP1527 3.0 0.0 1.0 PA F:ATP1527 3.1 0.0 1.0 O F:SER151 3.3 0.0 1.0 O3A F:ATP1527 3.4 0.0 1.0 O3B F:ATP1527 3.5 0.0 1.0 O2G F:ATP1527 3.5 0.0 1.0 N F:GLY88 3.5 0.0 1.0 CB F:ASP87 3.7 0.0 1.0 O5' F:ATP1527 3.8 0.0 1.0 CA F:ASP87 4.2 0.0 1.0 C F:SER151 4.2 0.0 1.0 O1G F:ATP1527 4.3 0.0 1.0 O1A F:ATP1527 4.3 0.0 1.0 O2B F:ATP1527 4.3 0.0 1.0 C F:ASP87 4.4 0.0 1.0 CA F:GLY88 4.4 0.0 1.0 P F:PO41525 4.5 0.0 1.0 C5' F:ATP1527 4.8 0.0 1.0 CA F:SER151 4.8 0.0 1.0

Magnesium binding site 7 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1526 b:0.0 occ:1.00 O3G G:ATP1527 1.8 0.0 1.0 O1B G:ATP1527 1.8 0.0 1.0 O2A G:ATP1527 1.8 0.0 1.0 OD1 G:ASP87 1.9 0.0 1.0 OD2 G:ASP87 1.9 0.0 1.0 CG G:ASP87 2.2 0.0 1.0 PB G:ATP1527 2.9 0.0 1.0 PG G:ATP1527 3.0 0.0 1.0 PA G:ATP1527 3.1 0.0 1.0 O G:SER151 3.4 0.0 1.0 O3B G:ATP1527 3.4 0.0 1.0 O3A G:ATP1527 3.5 0.0 1.0 O2G G:ATP1527 3.5 0.0 1.0 N G:GLY88 3.6 0.0 1.0 CB G:ASP87 3.7 0.0 1.0 O5' G:ATP1527 4.1 0.0 1.0 O1A G:ATP1527 4.1 0.0 1.0 CA G:ASP87 4.2 0.0 1.0 O1G G:ATP1527 4.2 0.0 1.0 O2B G:ATP1527 4.3 0.0 1.0 C G:SER151 4.3 0.0 1.0 C5' G:ATP1527 4.3 0.0 1.0 P G:PO41525 4.4 0.0 1.0 C G:ASP87 4.4 0.0 1.0 CA G:GLY88 4.5 0.0 1.0 CA G:SER151 5.0 0.0 1.0

Magnesium binding site 8 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1526 b:0.0 occ:1.00 O3G H:ATP1527 1.8 0.0 1.0 O1B H:ATP1527 1.8 0.0 1.0 O2A H:ATP1527 1.8 0.0 1.0 OD1 H:ASP87 1.8 0.0 1.0 OD2 H:ASP87 1.9 0.0 1.0 CG H:ASP87 2.2 0.0 1.0 PB H:ATP1527 2.9 0.0 1.0 PG H:ATP1527 3.1 0.0 1.0 PA H:ATP1527 3.1 0.0 1.0 O3B H:ATP1527 3.4 0.0 1.0 O3A H:ATP1527 3.5 0.0 1.0 N H:GLY88 3.5 0.0 1.0 P H:PO41525 3.6 0.0 1.0 CB H:ASP87 3.7 0.0 1.0 O2G H:ATP1527 3.7 0.0 1.0 O1A H:ATP1527 4.0 0.0 1.0 O5' H:ATP1527 4.1 0.0 1.0 CA H:ASP87 4.2 0.0 1.0 O1G H:ATP1527 4.2 0.0 1.0 O2B H:ATP1527 4.3 0.0 1.0 C H:ASP87 4.4 0.0 1.0 CA H:GLY88 4.4 0.0 1.0 C5' H:ATP1527 4.5 0.0 1.0 OD1 H:ASN153 4.7 0.0 1.0

Magnesium binding site 9 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1526 b:0.0 occ:1.00 O3G I:ATP1527 1.8 0.0 1.0 O1B I:ATP1527 1.8 0.0 1.0 O2A I:ATP1527 1.8 0.0 1.0 OD1 I:ASP87 1.8 0.0 1.0 OD2 I:ASP87 1.9 0.0 1.0 CG I:ASP87 2.2 0.0 1.0 PB I:ATP1527 2.9 0.0 1.0 PG I:ATP1527 3.1 0.0 1.0 PA I:ATP1527 3.1 0.0 1.0 O3B I:ATP1527 3.4 0.0 1.0 O3A I:ATP1527 3.5 0.0 1.0 N I:GLY88 3.5 0.0 1.0 P I:PO41525 3.6 0.0 1.0 CB I:ASP87 3.7 0.0 1.0 O2G I:ATP1527 3.7 0.0 1.0 O1A I:ATP1527 4.0 0.0 1.0 O5' I:ATP1527 4.1 0.0 1.0 CA I:ASP87 4.2 0.0 1.0 O1G I:ATP1527 4.2 0.0 1.0 O2B I:ATP1527 4.3 0.0 1.0 C I:ASP87 4.4 0.0 1.0 CA I:GLY88 4.4 0.0 1.0 C5' I:ATP1527 4.5 0.0 1.0 OD1 I:ASN153 4.7 0.0 1.0

Magnesium binding site 10 out of 14 in the Atp-Triggered Molecular Mechanics of the Chaperonin Groel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Atp-Triggered Molecular Mechanics of the Chaperonin Groel within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1526 b:0.0 occ:1.00 O3G J:ATP1527 1.8 0.0 1.0 O1B J:ATP1527 1.8 0.0 1.0 O2A J:ATP1527 1.8 0.0 1.0 OD1 J:ASP87 1.8 0.0 1.0 OD2 J:ASP87 1.9 0.0 1.0 CG J:ASP87 2.2 0.0 1.0 PB J:ATP1527 2.9 0.0 1.0 PG J:ATP1527 3.1 0.0 1.0 PA J:ATP1527 3.1 0.0 1.0 O3B J:ATP1527 3.4 0.0 1.0 O3A J:ATP1527 3.5 0.0 1.0 N J:GLY88 3.5 0.0 1.0 P J:PO41525 3.6 0.0 1.0 CB J:ASP87 3.7 0.0 1.0 O2G J:ATP1527 3.7 0.0 1.0 O1A J:ATP1527 4.0 0.0 1.0 O5' J:ATP1527 4.1 0.0 1.0 CA J:ASP87 4.2 0.0 1.0 O1G J:ATP1527 4.2 0.0 1.0 O2B J:ATP1527 4.3 0.0 1.0 C J:ASP87 4.4 0.0 1.0 CA J:GLY88 4.4 0.0 1.0 C5' J:ATP1527 4.5 0.0 1.0 OD1 J:ASN153 4.7 0.0 1.0

D.K.Clare, D.Vasishtan, S.Stagg, J.Quispe, G.W.Farr, M.Topf, A.L.Horwich, H.R.Saibil. Atp-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) V. 149 113 2012.
ISSN: ISSN 0092-8674
PubMed: 22445172
DOI: 10.1016/J.CELL.2012.02.047