Atomistry » Magnesium » PDB 4aaq-4alx » 4acb
Atomistry »
  Magnesium »
    PDB 4aaq-4alx »
      4acb »

Magnesium in PDB 4acb: Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp

Protein crystallography data

The structure of Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp, PDB code: 4acb was solved by M.Leibundgut, C.Frick, M.Thanbichler, A.Boeck, N.Ban, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.938 / 3.34
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 146.630, 146.630, 297.220, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 22.33

Other elements in 4acb:

The structure of Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp also contains other interesting chemical elements:

Mercury (Hg) 16 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp (pdb code 4acb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp, PDB code: 4acb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4acb

Go back to Magnesium Binding Sites List in 4acb
Magnesium binding site 1 out of 2 in the Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1470

b:1.0
occ:1.00
O A:HOH2001 2.0 0.3 1.0
O A:HOH2002 2.1 0.4 1.0
O1G A:GNP1469 2.1 0.1 1.0
OG1 A:THR19 2.1 0.9 1.0
O2B A:GNP1469 2.1 0.6 1.0
OG1 A:THR46 2.1 0.2 1.0
CB A:THR19 3.0 0.0 1.0
CB A:THR46 3.2 0.2 1.0
PG A:GNP1469 3.2 0.5 1.0
PB A:GNP1469 3.2 0.2 1.0
N3B A:GNP1469 3.3 0.9 1.0
N A:THR19 3.8 0.5 1.0
CA A:THR19 3.9 0.6 1.0
CG2 A:THR46 4.0 0.4 1.0
O3G A:GNP1469 4.1 0.1 1.0
O2A A:GNP1469 4.1 0.8 1.0
O1B A:GNP1469 4.1 0.9 1.0
CG2 A:THR19 4.2 0.4 1.0
OD1 A:ASP65 4.3 0.6 1.0
O2G A:GNP1469 4.3 0.0 1.0
N A:THR46 4.4 0.3 1.0
CA A:THR46 4.4 0.1 1.0
O3A A:GNP1469 4.4 0.6 1.0
OD2 A:ASP65 4.5 0.2 1.0
CE A:LYS18 4.6 0.3 1.0
PA A:GNP1469 4.7 0.2 1.0
CB A:LYS18 4.7 0.6 1.0
CG A:ASP65 4.8 0.9 1.0
O1A A:GNP1469 4.8 0.1 1.0

Magnesium binding site 2 out of 2 in 4acb

Go back to Magnesium Binding Sites List in 4acb
Magnesium binding site 2 out of 2 in the Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Translation Elongation Factor Selb From Methanococcus Maripaludis in Complex with the Gtp Analogue Gppnhp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1470

b:0.5
occ:0.90
O2B B:GDP1469 2.1 0.5 0.9
O B:HOH2002 2.1 0.3 0.9
O B:HOH2003 2.1 0.5 0.9
O B:HOH2004 2.1 0.9 0.9
O B:HOH2001 2.1 0.8 0.9
OG1 B:THR19 2.1 0.5 1.0
PB B:GDP1469 3.1 0.5 0.9
O3B B:GDP1469 3.2 0.2 0.9
CB B:THR19 3.4 0.7 1.0
O3A B:GDP1469 4.0 0.3 0.9
N B:THR19 4.0 0.5 1.0
O2A B:GDP1469 4.2 0.1 0.9
O1B B:GDP1469 4.3 0.3 0.9
CA B:THR19 4.3 0.2 1.0
CG2 B:THR19 4.3 0.8 1.0
CB B:LYS18 4.7 0.9 1.0
PA B:GDP1469 4.7 0.8 0.9
CE B:LYS18 4.7 0.2 1.0

Reference:

M.Leibundgut, C.Frick, M.Thanbichler, A.Bock, N.Ban. Selenocysteine Trna-Specific Elongation Factor Selb Is A Structural Chimaera of Elongation and Initiation Factors. Embo J. V. 24 11 2005.
ISSN: ISSN 0261-4189
PubMed: 15616587
DOI: 10.1038/SJ.EMBOJ.7600505
Page generated: Mon Dec 14 09:07:35 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy