Atomistry » Magnesium » PDB 4aaq-4alx » 4aci
Atomistry »
  Magnesium »
    PDB 4aaq-4alx »
      4aci »

Magnesium in PDB 4aci: Structure of the C. Glutamicum Acnr Crystal Form II

Protein crystallography data

The structure of Structure of the C. Glutamicum Acnr Crystal Form II, PDB code: 4aci was solved by J.Garcia-Nafria, M.Baumgart, J.P.Turkenburg, A.J.Wilkinson, M.Bott, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.79 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.210, 72.790, 145.570, 90.00, 90.00, 90.00
R / Rfree (%) 14.154 / 20.488

Other elements in 4aci:

The structure of Structure of the C. Glutamicum Acnr Crystal Form II also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the C. Glutamicum Acnr Crystal Form II (pdb code 4aci). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the C. Glutamicum Acnr Crystal Form II, PDB code: 4aci:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4aci

Go back to Magnesium Binding Sites List in 4aci
Magnesium binding site 1 out of 2 in the Structure of the C. Glutamicum Acnr Crystal Form II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the C. Glutamicum Acnr Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1187

b:13.9
occ:1.00
O3 A:CIT1189 2.0 15.8 1.0
O A:HOH2097 2.1 12.6 1.0
O A:HOH2098 2.1 16.9 1.0
OE2 A:GLU181 2.1 16.0 1.0
O5 A:CIT1189 2.1 11.8 1.0
O7 A:CIT1189 2.2 11.6 1.0
C6 A:CIT1189 2.9 10.2 1.0
C3 A:CIT1189 2.9 11.1 1.0
C5 A:CIT1189 3.0 14.2 1.0
CD A:GLU181 3.2 28.5 1.0
C4 A:CIT1189 3.5 15.5 1.0
CG A:GLU181 3.8 27.9 1.0
NH2 A:ARG185 3.9 23.7 1.0
O6 A:CIT1189 4.0 12.2 1.0
O A:ASN77 4.1 10.2 1.0
O1 A:CIT1189 4.1 11.6 1.0
O A:HOH2099 4.1 21.7 1.0
O A:HOH2163 4.1 25.9 1.0
O4 A:CIT1189 4.2 18.7 1.0
OE1 A:GLU181 4.2 28.1 1.0
OD1 A:ASN77 4.2 14.0 1.0
C2 A:CIT1189 4.3 12.2 1.0
NH2 A:ARG130 4.5 13.4 1.0
CG A:ASN77 4.5 10.2 1.0
ND2 A:ASN77 4.6 14.2 1.0
C1 A:CIT1189 4.6 13.1 1.0
CB A:VAL80 4.7 13.2 1.0
CB A:GLU181 4.7 18.6 1.0
C A:ASN77 4.8 8.6 1.0
CZ A:ARG185 4.9 25.6 1.0
CG1 A:VAL80 4.9 13.9 1.0

Magnesium binding site 2 out of 2 in 4aci

Go back to Magnesium Binding Sites List in 4aci
Magnesium binding site 2 out of 2 in the Structure of the C. Glutamicum Acnr Crystal Form II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the C. Glutamicum Acnr Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1189

b:13.5
occ:1.00
OE2 B:GLU181 1.9 17.5 1.0
O1 B:CIT1190 2.1 12.2 1.0
O B:HOH2055 2.1 13.0 1.0
O B:HOH2056 2.1 15.1 1.0
O5 B:CIT1190 2.1 12.2 1.0
O7 B:CIT1190 2.2 9.7 1.0
C6 B:CIT1190 2.9 12.0 1.0
CD B:GLU181 2.9 21.3 1.0
C3 B:CIT1190 2.9 11.1 1.0
C1 B:CIT1190 3.1 13.8 1.0
CG B:GLU181 3.3 21.4 1.0
C2 B:CIT1190 3.5 14.3 1.0
NH2 B:ARG185 3.9 25.0 1.0
OE1 B:GLU181 4.0 22.0 1.0
O B:ASN77 4.1 11.6 1.0
O4 B:CIT1190 4.1 11.0 1.0
O6 B:CIT1190 4.1 12.7 1.0
O B:HOH2057 4.1 17.9 1.0
OD1 B:ASN77 4.1 14.2 1.0
O2 B:CIT1190 4.2 19.1 1.0
O B:HOH2138 4.2 24.8 1.0
C4 B:CIT1190 4.3 11.7 1.0
NH2 B:ARG130 4.5 15.0 1.0
CG B:ASN77 4.6 13.8 1.0
C5 B:CIT1190 4.6 10.8 1.0
ND2 B:ASN77 4.7 13.6 1.0
CB B:VAL80 4.7 11.8 1.0
CB B:GLU181 4.8 19.3 1.0
C B:ASN77 4.8 9.4 1.0
CZ B:ARG185 4.9 25.3 1.0

Reference:

J.Garcia-Nafria, M.Baumgart, J.P.Turkenburg, A.J.Wilkinson, M.Bott, K.S.Wilson. Crystal and Solution Studies Reveal That the Transcriptional Regulator Acnr of Corynebacterium Glutamicum Is Regulated By Citrate:MG2+ Binding to A Non- Canonical Pocket. J.Biol.Chem. V. 288 15800 2013.
ISSN: ISSN 0021-9258
PubMed: 23589369
DOI: 10.1074/JBC.M113.462440
Page generated: Mon Dec 14 09:07:37 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy