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Magnesium in PDB 4as3: Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form

Enzymatic activity of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form

All present enzymatic activity of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form:
3.1.3.75;

Protein crystallography data

The structure of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form, PDB code: 4as3 was solved by L.Infantes, L.H.Otero, A.Albert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 119.60 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 165.343, 69.591, 119.569, 90.00, 90.00, 90.00
R / Rfree (%) 17.731 / 24.947

Other elements in 4as3:

The structure of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form (pdb code 4as3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form, PDB code: 4as3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4as3

Go back to Magnesium Binding Sites List in 4as3
Magnesium binding site 1 out of 4 in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1328

b:30.6
occ:1.00
 O A:ASP33 2.0 28.9 1.0
OD2 A:ASP31 2.0 24.8 1.0
O A:HOH2015 2.0 26.7 1.0
O A:HOH2011 2.1 20.4 1.0
OD1 A:ASP262 2.1 20.6 1.0
O A:HOH2012 2.4 26.6 1.0
CG A:ASP31 3.1 28.0 1.0
CG A:ASP262 3.1 21.9 1.0
C A:ASP33 3.1 30.5 1.0
OD2 A:ASP262 3.4 21.9 1.0
OD1 A:ASP31 3.5 29.9 1.0
CA A:ASP33 3.8 31.1 1.0
OG1 A:THR35 3.9 32.7 1.0
O A:HOH2014 3.9 34.4 1.0
OG1 A:THR263 3.9 27.5 1.0
CB A:ASP33 4.0 28.7 1.0
N A:ASP33 4.0 24.9 1.0
O1 A:BTB1330 4.0 35.1 1.0
CB A:ASN34 4.1 25.5 1.0
OD2 A:ASP267 4.2 27.1 1.0
N A:ASN34 4.2 31.3 1.0
O6 A:BTB1330 4.2 48.5 1.0
CB A:ASP31 4.4 25.6 1.0
O A:HOH2013 4.4 41.3 1.0
CL A:CL1329 4.4 47.7 1.0
CB A:ASP262 4.5 20.9 1.0
CA A:ASN34 4.5 28.2 1.0
C A:ASN34 4.5 24.7 1.0
N A:THR35 4.6 26.4 1.0
C A:MET32 4.7 27.5 1.0
CB A:THR35 4.8 29.1 1.0
C6 A:BTB1330 4.8 42.6 1.0
CB A:THR263 4.9 25.1 1.0
N A:THR263 5.0 23.1 1.0

Magnesium binding site 2 out of 4 in 4as3

Go back to Magnesium Binding Sites List in 4as3
Magnesium binding site 2 out of 4 in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1328

b:18.4
occ:1.00
 OD2 B:ASP31 1.9 27.4 1.0
O B:HOH2013 1.9 16.2 1.0
O B:HOH2017 2.0 24.9 1.0
OD1 B:ASP262 2.0 23.4 1.0
O B:ASP33 2.1 24.9 1.0
O B:HOH2015 2.3 29.4 1.0
CG B:ASP31 3.0 26.8 1.0
CG B:ASP262 3.0 25.8 1.0
C B:ASP33 3.2 25.5 1.0
OD2 B:ASP262 3.3 25.1 1.0
OD1 B:ASP31 3.6 26.4 1.0
OG1 B:THR263 3.8 28.1 1.0
O B:HOH2014 4.0 44.0 1.0
OD2 B:ASP267 4.0 28.5 1.0
CA B:ASP33 4.0 25.1 1.0
CB B:ASP33 4.1 24.7 1.0
OG1 B:THR35 4.2 21.5 1.0
CB B:ASP31 4.2 25.3 1.0
O3 B:BTB1330 4.3 44.2 1.0
N B:ASP33 4.3 25.3 1.0
N B:ASN34 4.3 26.6 1.0
CL B:CL1329 4.4 46.0 1.0
CB B:ASN34 4.4 26.9 1.0
O B:HOH2016 4.4 26.5 1.0
CB B:ASP262 4.4 24.7 1.0
O6 B:BTB1330 4.6 49.6 1.0
CA B:ASN34 4.6 26.5 1.0
C B:ASN34 4.6 26.1 1.0
N B:THR35 4.6 26.2 1.0
N B:ASP262 4.8 24.5 1.0
C B:MET32 4.8 26.7 1.0
N B:THR263 4.8 26.2 1.0
OD1 B:ASP267 4.9 30.1 1.0
CG B:ASP267 4.9 31.2 1.0
CB B:THR35 4.9 24.4 1.0
CB B:THR263 4.9 26.9 1.0

Magnesium binding site 3 out of 4 in 4as3

Go back to Magnesium Binding Sites List in 4as3
Magnesium binding site 3 out of 4 in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1328

b:26.2
occ:1.00
 OD2 C:ASP31 2.0 40.4 1.0
O C:HOH2011 2.0 36.3 1.0
O C:HOH2010 2.1 39.3 1.0
O C:ASP33 2.2 29.1 1.0
OD1 C:ASP262 2.3 25.1 1.0
O C:HOH2009 2.4 24.3 1.0
CG C:ASP31 3.0 32.2 1.0
CG C:ASP262 3.3 28.5 1.0
OD1 C:ASP31 3.3 37.7 1.0
C C:ASP33 3.4 32.0 1.0
OD2 C:ASP262 3.6 30.1 1.0
CL C:CL1329 3.8 67.6 1.0
O6 C:BTB1330 3.9 61.8 1.0
OG1 C:THR263 3.9 33.1 1.0
CA C:ASP33 4.0 34.2 1.0
OD2 C:ASP267 4.1 38.5 1.0
CB C:ASP33 4.1 34.7 1.0
N C:ASP33 4.1 32.0 1.0
O3 C:BTB1330 4.2 38.2 1.0
CB C:ASP31 4.3 31.4 1.0
O C:HOH2008 4.3 35.7 1.0
OG1 C:THR35 4.4 30.1 1.0
C6 C:BTB1330 4.4 57.4 1.0
N C:ASN34 4.5 32.1 1.0
O C:HOH2013 4.5 28.4 1.0
CB C:ASN34 4.6 31.8 1.0
CB C:ASP262 4.7 24.8 1.0
C C:MET32 4.8 31.6 1.0
N C:THR263 4.9 28.7 1.0
CA C:ASN34 4.9 29.6 1.0
OD1 C:ASP267 4.9 33.1 1.0
CG C:ASP267 4.9 35.5 1.0
C C:ASN34 4.9 26.2 1.0

Magnesium binding site 4 out of 4 in 4as3

Go back to Magnesium Binding Sites List in 4as3
Magnesium binding site 4 out of 4 in the Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1328

b:22.8
occ:1.00
 O D:HOH2019 1.9 26.4 1.0
O D:HOH2023 2.0 24.4 1.0
OD2 D:ASP31 2.0 27.6 1.0
O D:HOH2020 2.1 23.3 1.0
OD1 D:ASP262 2.1 24.0 1.0
O D:ASP33 2.2 21.7 1.0
CG D:ASP31 3.1 27.9 1.0
CG D:ASP262 3.1 26.8 1.0
C D:ASP33 3.3 24.6 1.0
OD2 D:ASP262 3.5 26.1 1.0
OD1 D:ASP31 3.5 30.3 1.0
O D:HOH2022 3.9 35.0 1.0
OG1 D:THR263 4.0 27.1 1.0
CA D:ASP33 4.0 25.8 1.0
O D:HOH2021 4.0 26.0 1.0
N D:ASP33 4.0 25.5 1.0
CB D:ASP33 4.1 26.3 1.0
CL D:CL1329 4.2 46.2 1.0
OD2 D:ASP267 4.2 26.1 1.0
O6 D:BTB1330 4.3 45.0 1.0
CB D:ASP31 4.3 25.8 1.0
OG1 D:THR35 4.4 25.0 1.0
N D:ASN34 4.4 24.5 1.0
CB D:ASN34 4.4 21.6 1.0
O D:HOH2027 4.4 28.3 1.0
O3 D:BTB1330 4.5 31.0 1.0
CB D:ASP262 4.6 26.3 1.0
N D:THR35 4.7 23.0 1.0
CA D:ASN34 4.7 25.1 1.0
C D:MET32 4.8 26.0 1.0
C D:ASN34 4.8 24.7 1.0
C6 D:BTB1330 4.8 46.9 1.0
N D:THR263 4.9 26.1 1.0
CB D:THR263 5.0 27.1 1.0

Reference:

L.Infantes, L.H.Otero, P.R.Beassoni, C.Boetsch, A.T.Lisa, C.E.Domenech, A.Albert. The Structural Domains of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase Cooperate in Substrate Hydrolysis: 3D Structure and Enzymatic Mechanism. J.Mol.Biol. V. 423 503 2012.
ISSN: ISSN 0022-2836
PubMed: 22922065
DOI: 10.1016/J.JMB.2012.07.024
Page generated: Thu Aug 15 14:41:37 2024

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