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Magnesium in PDB 4ay2: Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I

Enzymatic activity of Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I

All present enzymatic activity of Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I:
3.6.4.13;

Protein crystallography data

The structure of Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I, PDB code: 4ay2 was solved by D.Luo, A.M.Pyle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.90 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.745, 76.156, 221.222, 90.00, 90.00, 90.00
R / Rfree (%) 21.816 / 28.583

Other elements in 4ay2:

The structure of Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I (pdb code 4ay2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I, PDB code: 4ay2:

Magnesium binding site 1 out of 1 in 4ay2

Go back to Magnesium Binding Sites List in 4ay2
Magnesium binding site 1 out of 1 in the Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1925

b:49.6
occ:1.00
O1B A:ADP1924 2.6 59.4 1.0
CG2 A:THR271 3.0 46.0 1.0
O3B A:ADP1924 3.2 58.5 1.0
PB A:ADP1924 3.4 59.5 1.0
OD1 A:ASP372 3.6 38.3 1.0
N A:THR271 3.9 44.0 1.0
CB A:LYS270 4.0 38.3 1.0
O1A A:ADP1924 4.0 51.9 1.0
CE A:LYS270 4.0 36.1 1.0
CB A:THR271 4.2 47.0 1.0
NZ A:LYS270 4.3 37.5 1.0
CD1 A:LEU408 4.3 23.1 1.0
CA A:THR271 4.4 44.2 1.0
C A:LYS270 4.4 42.1 1.0
CG A:ASP372 4.4 37.3 1.0
O2B A:ADP1924 4.5 60.5 1.0
O3A A:ADP1924 4.6 55.3 1.0
CA A:LYS270 4.6 41.1 1.0
OD2 A:ASP372 4.6 39.5 1.0
OG1 A:THR271 4.7 48.3 1.0
PA A:ADP1924 4.7 57.0 1.0
CB A:LEU408 4.7 22.2 1.0
N A:LYS270 4.8 42.5 1.0
CD A:LYS270 4.8 38.2 1.0

Reference:

D.Luo, A.Kohlway, A.Vela, A.M.Pyle. Visualizing the Determinants of Viral Rna Recognition By Innate Immune Sensor Rig-I. Structure V. 20 1983 2012.
ISSN: ISSN 0969-2126
PubMed: 23022350
DOI: 10.1016/J.STR.2012.08.029
Page generated: Mon Dec 14 09:09:26 2020

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