Atomistry » Magnesium » PDB 4av3-4b2m » 4b2k
Atomistry »
  Magnesium »
    PDB 4av3-4b2m »
      4b2k »

Magnesium in PDB 4b2k: Complexes of Dodecin with Flavin and Flavin-Like Ligands

Protein crystallography data

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 4b2k was solved by H.Staudt, M.Hoesl, A.Dreuw, S.Serdjukow, D.Oesterhelt, N.Budisa, J.Wachtveitl, M.Grininger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 142.301, 142.301, 142.301, 90.00, 90.00, 90.00
R / Rfree (%) 17.163 / 19.725

Other elements in 4b2k:

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complexes of Dodecin with Flavin and Flavin-Like Ligands (pdb code 4b2k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 4b2k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4b2k

Go back to Magnesium Binding Sites List in 4b2k
Magnesium binding site 1 out of 2 in the Complexes of Dodecin with Flavin and Flavin-Like Ligands


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complexes of Dodecin with Flavin and Flavin-Like Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:33.7
occ:1.00
O A:HOH2032 2.0 31.9 1.0
OE2 A:GLU14 2.1 30.7 1.0
O A:HOH2083 2.1 33.0 1.0
O A:HOH2026 2.2 35.5 1.0
O A:HOH2025 2.2 39.6 1.0
CD A:GLU14 3.1 25.5 1.0
OE1 A:GLU14 3.4 30.2 1.0
OE1 A:GLU51 3.9 75.5 1.0
CG A:GLU14 4.4 26.7 1.0
O A:GLU13 4.5 25.1 1.0
O A:HOH2027 4.6 65.9 1.0
CB A:GLU13 4.6 29.6 1.0
OE2 A:GLU51 4.6 63.9 1.0
OE1 A:GLU13 4.6 44.1 1.0
CD A:GLU51 4.7 81.0 1.0

Magnesium binding site 2 out of 2 in 4b2k

Go back to Magnesium Binding Sites List in 4b2k
Magnesium binding site 2 out of 2 in the Complexes of Dodecin with Flavin and Flavin-Like Ligands


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complexes of Dodecin with Flavin and Flavin-Like Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg102

b:62.2
occ:1.00
O A:HOH2090 2.1 63.0 1.0
O A:HOH2093 2.2 60.2 1.0
O A:HOH2091 2.3 53.1 1.0
O A:HOH2092 2.4 57.0 1.0
O A:HOH2101 3.7 59.6 0.5
O4 A:RBF1067 4.2 41.6 1.0
O A:HOH2098 4.3 55.2 1.0
OE2 A:GLU38 4.3 36.8 1.0
NZ A:LYS5 4.4 33.3 1.0
OE1 A:GLU38 4.4 38.9 1.0
CD A:GLU38 4.7 44.9 1.0

Reference:

H.Staudt, M.G.Hoesl, A.Dreuw, S.Serdjukow, D.Oesterhelt, N.Budisa, J.Wachtveitl, M.Grininger. Directed Manipulation of A Flavoprotein Photocycle. Angew.Chem.Int.Ed.Engl. V. 52 8463 2013.
ISSN: ISSN 1433-7851
PubMed: 23818044
DOI: 10.1002/ANIE.201302334
Page generated: Mon Dec 14 09:09:58 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy